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The map label for this gene is ycbQ [H]

Identifier: 170679821

GI number: 170679821

Start: 2189039

End: 2189578

Strand: Reverse

Name: ycbQ [H]

Synonym: EcSMS35_2181

Alternate gene names: 170679821

Gene position: 2189578-2189039 (Counterclockwise)

Preceding gene: 170683651

Following gene: 170682796

Centisome position: 43.2

GC content: 41.48

Gene sequence:

>540_bases
ATGAAAAAAAATGTATTGGCGGCGTTTATAACTGTGATATGTACAACTTCAAGTGTTATGGCGGCTGATGATAATGCCAT
CACGGATGGCTCGGTTACGTTTAATGGTAAAGTCATTGCTCCTGCCTGTACGCTGGTTGCTGCGACGAAAGATTCCGTGG
TGACTTTACCAGATGTTAGTGCAACGAAGTTGCAAAGTAATGGTCAGGTTTCTGGGGTGCAAACTGATGTGCCAATTGCA
TTAGAAGATTGTGATATTACCGTAACAAAAAATGCAACGTTCACTTTTAATGGCACAGCGGATACTACGCAGATTACAGC
GTTTGCTAACCAGGCCTCATCTGAGGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGTCATTA
CGCCAGACACAGAAACCGGGAATATTTTGTTGCAGAGTGGAAATCAAACGCTAACTTTTAAAGTAGATTATATCGCTACG
GGTAAAGCGACGTCAGGTAATGTCAATGCGGTAACAAATTTCCATATTAATTATTATTAA

Upstream 100 bases:

>100_bases
TAAACACTACTGGTTTAAATGGCGGTCATTTGTTGTTATTATTAAGTCCAATGTCATTTGCAGGCATTATCATATTTACG
AAAAAATCAGGATGATAACG

Downstream 100 bases:

>100_bases
TATCAGCCATTAATTTTTAATTAATTAATACCCTTCCAGTGTCCTGGAGGGGATATTCATTTTTTTAAGAGTGACTATTT
ATGAAAACTTGCATAACAAA

Product: putative fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKKNVLAAFITVICTTSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVSATKLQSNGQVSGVQTDVPIA
LEDCDITVTKNATFTFNGTADTTQITAFANQASSEAATNVALQMYMNDGTTVITPDTETGNILLQSGNQTLTFKVDYIAT
GKATSGNVNAVTNFHINYY

Sequences:

>Translated_179_residues
MKKNVLAAFITVICTTSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVSATKLQSNGQVSGVQTDVPIA
LEDCDITVTKNATFTFNGTADTTQITAFANQASSEAATNVALQMYMNDGTTVITPDTETGNILLQSGNQTLTFKVDYIAT
GKATSGNVNAVTNFHINYY
>Mature_179_residues
MKKNVLAAFITVICTTSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVSATKLQSNGQVSGVQTDVPIA
LEDCDITVTKNATFTFNGTADTTQITAFANQASSEAATNVALQMYMNDGTTVITPDTETGNILLQSGNQTLTFKVDYIAT
GKATSGNVNAVTNFHINYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87081804, Length=179, Percent_Identity=92.7374301675978, Blast_Score=331, Evalue=1e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18663; Mature: 18663

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNVLAAFITVICTTSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVS
CCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCEEECCEEEEEEECCCCEEEECCCC
ATKLQSNGQVSGVQTDVPIALEDCDITVTKNATFTFNGTADTTQITAFANQASSEAATNV
CEEECCCCCCCEEEECCCEEEECCEEEEECCEEEEECCCCCCEEEEEEECCCCCCCCCEE
ALQMYMNDGTTVITPDTETGNILLQSGNQTLTFKVDYIATGKATSGNVNAVTNFHINYY
EEEEEECCCCEEEECCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MKKNVLAAFITVICTTSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVS
CCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCEEECCEEEEEEECCCCEEEECCCC
ATKLQSNGQVSGVQTDVPIALEDCDITVTKNATFTFNGTADTTQITAFANQASSEAATNV
CEEECCCCCCCEEEECCCEEEECCEEEEECCEEEEECCCCCCEEEEEEECCCCCCCCCEE
ALQMYMNDGTTVITPDTETGNILLQSGNQTLTFKVDYIATGKATSGNVNAVTNFHINYY
EEEEEECCCCEEEECCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]