Click here to switch to the map view.

The map label for this gene is ycgF [H]

Identifier: 170079248

GI number: 170079248

Start: 2787617

End: 2788366

Strand: Direct

Name: ycgF [H]

Synonym: SYNPCC7002_A2654

Alternate gene names: 170079248

Gene position: 2787617-2788366 (Clockwise)

Preceding gene: 170079247

Following gene: 170079249

Centisome position: 92.67

GC content: 43.33

Gene sequence:

>750_bases
ATGGAATGTAGAGAATGCACGAATCGAAATAAACTCGATTTCGAATTCACAATGGCCTTTCAACCCATTGTCAACCTAGA
AACCCAAACAATTTTTGCCCATGAAGCCCTGGTGCGGGGTTTAAATAATGAGTCAGCCCAAGCAATTTTTCAACACATTA
ACGACAGCAACCGCTACTTATTTGACCAGTCCTGTCGCACCACAGCAATTCGTCTTGCCGCAGAACTGCATATTCCCTGT
TTTTTGAGTATTAATTTCTTACCCAATGCCGTTTATGAACCAGAACGCTGCATTCGCACAACCCTAGAAGCGGCGGAAAC
CTATGGATTTCCCATTGAGCAAATTATTTTTGAGATTACCGAAAGTGAACAAATCACAGATTTAGTCCACCTCCGAAAAA
TCGTTGAATATTATCGGGCCCGTGGTTTTAAAACAGCCATTGATGATTTTGGGGCAGGCTATGCTGGGTTAAATCTTCTA
TCAGAAATTCAGACTGATTTGATCAAACTTGACATGGCCTTAATTCGCGGCATTGACCAAGATAAAGTGCGGCAAGCGAT
CGTCAAAGGTGTGCTGCAAGTTGCCGGGGAACTCTCTAGTCTTGTCATTGCCGAAGGCATTGAAACCCAAGCAGAATTAA
CCACCCTCCAAGGGCTAGGCATTAACCTTTTCCAAGGCTTTTATTTTGCTAAACCCACATTTCAATCCCTGGCCCAAATT
CCGTCAGACAGGTTTGTCAATGTCGCTTAA

Upstream 100 bases:

>100_bases
TATTGATCTTCATGGAAACAAACCCTAACCGCTGAATATGTTGATGTTCAATATTGATCATCGCCAGGATAGTTAAGAGA
CCCTACAAATTAGGTGCACC

Downstream 100 bases:

>100_bases
TTTTGGCGATCACCATGGTCAATATCGCCCTTCTCCTCTGACGCATTTTTTCCAAGTTGACCGTGGCCTTCACCTCTGCG
CATTCCTAACTTTTCCCGAA

Product: EAL domain-containing protein

Products: NA

Alternate protein names: Blrp [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MECRECTNRNKLDFEFTMAFQPIVNLETQTIFAHEALVRGLNNESAQAIFQHINDSNRYLFDQSCRTTAIRLAAELHIPC
FLSINFLPNAVYEPERCIRTTLEAAETYGFPIEQIIFEITESEQITDLVHLRKIVEYYRARGFKTAIDDFGAGYAGLNLL
SEIQTDLIKLDMALIRGIDQDKVRQAIVKGVLQVAGELSSLVIAEGIETQAELTTLQGLGINLFQGFYFAKPTFQSLAQI
PSDRFVNVA

Sequences:

>Translated_249_residues
MECRECTNRNKLDFEFTMAFQPIVNLETQTIFAHEALVRGLNNESAQAIFQHINDSNRYLFDQSCRTTAIRLAAELHIPC
FLSINFLPNAVYEPERCIRTTLEAAETYGFPIEQIIFEITESEQITDLVHLRKIVEYYRARGFKTAIDDFGAGYAGLNLL
SEIQTDLIKLDMALIRGIDQDKVRQAIVKGVLQVAGELSSLVIAEGIETQAELTTLQGLGINLFQGFYFAKPTFQSLAQI
PSDRFVNVA
>Mature_249_residues
MECRECTNRNKLDFEFTMAFQPIVNLETQTIFAHEALVRGLNNESAQAIFQHINDSNRYLFDQSCRTTAIRLAAELHIPC
FLSINFLPNAVYEPERCIRTTLEAAETYGFPIEQIIFEITESEQITDLVHLRKIVEYYRARGFKTAIDDFGAGYAGLNLL
SEIQTDLIKLDMALIRGIDQDKVRQAIVKGVLQVAGELSSLVIAEGIETQAELTTLQGLGINLFQGFYFAKPTFQSLAQI
PSDRFVNVA

Specific function: Binds to and releases the YcgE repressor from its bound DNA target in a blue-light-dependent (470 nm) fashion. A shift to low temperature also triggers a YcgF-medisted relief of repression by YcgE, suggesting YcgF may serve as a thermometer. Blue light ma

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1787410, Length=224, Percent_Identity=34.375, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=27.2357723577236, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI226510982, Length=233, Percent_Identity=27.0386266094421, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081921, Length=248, Percent_Identity=25.8064516129032, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=26.2295081967213, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=27.1551724137931, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787541, Length=118, Percent_Identity=38.9830508474576, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788849, Length=150, Percent_Identity=31.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082096, Length=190, Percent_Identity=27.3684210526316, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786507, Length=134, Percent_Identity=26.865671641791, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081743, Length=226, Percent_Identity=27.8761061946903, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001792
- InterPro:   IPR007024
- InterPro:   IPR001633 [H]

Pfam domain/function: PF04940 BLUF; PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 28094; Mature: 28094

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECRECTNRNKLDFEFTMAFQPIVNLETQTIFAHEALVRGLNNESAQAIFQHINDSNRYL
CCCHHHCCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEE
FDQSCRTTAIRLAAELHIPCFLSINFLPNAVYEPERCIRTTLEAAETYGFPIEQIIFEIT
ECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
ESEQITDLVHLRKIVEYYRARGFKTAIDDFGAGYAGLNLLSEIQTDLIKLDMALIRGIDQ
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
DKVRQAIVKGVLQVAGELSSLVIAEGIETQAELTTLQGLGINLFQGFYFAKPTFQSLAQI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCC
PSDRFVNVA
CCCCEEECC
>Mature Secondary Structure
MECRECTNRNKLDFEFTMAFQPIVNLETQTIFAHEALVRGLNNESAQAIFQHINDSNRYL
CCCHHHCCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEE
FDQSCRTTAIRLAAELHIPCFLSINFLPNAVYEPERCIRTTLEAAETYGFPIEQIIFEIT
ECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
ESEQITDLVHLRKIVEYYRARGFKTAIDDFGAGYAGLNLLSEIQTDLIKLDMALIRGIDQ
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
DKVRQAIVKGVLQVAGELSSLVIAEGIETQAELTTLQGLGINLFQGFYFAKPTFQSLAQI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCC
PSDRFVNVA
CCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]