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The map label for this gene is patA [H]

Identifier: 170079196

GI number: 170079196

Start: 2728190

End: 2729314

Strand: Reverse

Name: patA [H]

Synonym: SYNPCC7002_A2602

Alternate gene names: 170079196

Gene position: 2729314-2728190 (Counterclockwise)

Preceding gene: 170079197

Following gene: 170079195

Centisome position: 90.73

GC content: 50.22

Gene sequence:

>1125_bases
ATGAAAGTGCAAGATGCCATCACCAAAAACGTTGTGATTCCGGGCCAAGTCCTCCAATCCCTGATCCAACGGCAAATGTC
GGGGACCATGACCATTTACGATCCCTTAGATGAATCGGTATTTTGGCAGCTTTATTTTGGGGGCGGGAAGCTGCATTTTG
CCACCAGTGGTATGGGCAAACGGGAGCGCTTAACGTATCTTTTGGGGCAACTGTTTCCGAAAGCGAAATTTCCCATGGGA
GATAGCTTTTCCCAAGATTATGATTACATTTGTCAAATTTGGAAAGCTGGAAAATTATCCCTCCAGCAAGTCCGCCAAGT
TTTATTTTTTACGACCCAAGAGGCGATCGCCCAGTTTTTATCCCTGCCCCGCGCTGCCATTAAATTTGAACGCGCCCTTA
ATTTAGATCCCCTGTTGCTGTCCCTGTCCCTCAAGGAAATGGTGCGCCCAATCCAGCCGACCGTTCGCCAATGGGTACAA
CTCCGCCCCGAAATCGCTTCCCCTTTCCAGCGCCTACAAGTCAAAGATTTCCGTGAAATCCGGAGCCGCTCCTGGCTAAA
CCTCCAGGACTATCAATTTATGGAAAGCCTCCGGGAGCCCCTCGACCAACAAGTCACCCTCTATGAGCTGAGTCACCACA
CCCGCCGTTCCACCCTCGAACTCAGCCAACTCTTCCATCCCCTCGTCAAAACAGGCTTGATTGAAGTTATTCCCTATGCG
GGCGTTCCCCAAAAACCCAAACCCCGCATTGCCTGTATTGATGACAGCAAATCAATACAACGGGTCGTCAAAATGACCCT
AGAAGCCAGTGGCTTTGAGGTTATCGGGGTCACTGAACCTGCTTTATCTCTGAGTACCTTTGCTCGCCAACGGCCAGAAC
TAATTCTGATGGATATCAACATGCCCGAAATCGATGGTTACGAGCTTTGTCGCCTGTTTAACCAATCCGAAATGCTTAGG
GATATTCCCGTGGTGATGCTTACGGGGCGCGATGGAATTATTGATCGCCTCCGTGCCAAGATGGTGGGGGCTTCTGACTA
CATCGCTAAACCGTTCAATCCCCAGGATTTGATACGGATGGTGCAGTCCTATGTGGAGCAAACATCAGCGCAATCTACGC
CCTAG

Upstream 100 bases:

>100_bases
TGCGCTTACCCACTACCCTCCCGATCCATGTTTCCCAGCCATGGGTAAAGACCAAAGGCGCTAAACCCTCTTCAAATCAA
TTCCCGCTAGTGTGTTTCAT

Downstream 100 bases:

>100_bases
AGGTTGTATTTCATAATCTCTAAACTCAATTTTCAGAATAAATTGCGCCAAGTTCTAACACTGATCAAGAAAATAAGATG
AAAAAAGTTTTAGTTGTTGA

Product: two-component response regulator

Products: NA

Alternate protein names: PAT-1 [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKVQDAITKNVVIPGQVLQSLIQRQMSGTMTIYDPLDESVFWQLYFGGGKLHFATSGMGKRERLTYLLGQLFPKAKFPMG
DSFSQDYDYICQIWKAGKLSLQQVRQVLFFTTQEAIAQFLSLPRAAIKFERALNLDPLLLSLSLKEMVRPIQPTVRQWVQ
LRPEIASPFQRLQVKDFREIRSRSWLNLQDYQFMESLREPLDQQVTLYELSHHTRRSTLELSQLFHPLVKTGLIEVIPYA
GVPQKPKPRIACIDDSKSIQRVVKMTLEASGFEVIGVTEPALSLSTFARQRPELILMDINMPEIDGYELCRLFNQSEMLR
DIPVVMLTGRDGIIDRLRAKMVGASDYIAKPFNPQDLIRMVQSYVEQTSAQSTP

Sequences:

>Translated_374_residues
MKVQDAITKNVVIPGQVLQSLIQRQMSGTMTIYDPLDESVFWQLYFGGGKLHFATSGMGKRERLTYLLGQLFPKAKFPMG
DSFSQDYDYICQIWKAGKLSLQQVRQVLFFTTQEAIAQFLSLPRAAIKFERALNLDPLLLSLSLKEMVRPIQPTVRQWVQ
LRPEIASPFQRLQVKDFREIRSRSWLNLQDYQFMESLREPLDQQVTLYELSHHTRRSTLELSQLFHPLVKTGLIEVIPYA
GVPQKPKPRIACIDDSKSIQRVVKMTLEASGFEVIGVTEPALSLSTFARQRPELILMDINMPEIDGYELCRLFNQSEMLR
DIPVVMLTGRDGIIDRLRAKMVGASDYIAKPFNPQDLIRMVQSYVEQTSAQSTP
>Mature_374_residues
MKVQDAITKNVVIPGQVLQSLIQRQMSGTMTIYDPLDESVFWQLYFGGGKLHFATSGMGKRERLTYLLGQLFPKAKFPMG
DSFSQDYDYICQIWKAGKLSLQQVRQVLFFTTQEAIAQFLSLPRAAIKFERALNLDPLLLSLSLKEMVRPIQPTVRQWVQ
LRPEIASPFQRLQVKDFREIRSRSWLNLQDYQFMESLREPLDQQVTLYELSHHTRRSTLELSQLFHPLVKTGLIEVIPYA
GVPQKPKPRIACIDDSKSIQRVVKMTLEASGFEVIGVTEPALSLSTFARQRPELILMDINMPEIDGYELCRLFNQSEMLR
DIPVVMLTGRDGIIDRLRAKMVGASDYIAKPFNPQDLIRMVQSYVEQTSAQSTP

Specific function: Controls heterocyst pattern formation. Required for the differentiation of intercalary heterocysts but not for terminal heterocysts [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=121, Percent_Identity=33.8842975206612, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790860, Length=126, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790863, Length=121, Percent_Identity=30.5785123966942, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788394, Length=124, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786911, Length=125, Percent_Identity=28.8, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=114, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789809, Length=124, Percent_Identity=28.2258064516129, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87082012, Length=122, Percent_Identity=29.5081967213115, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790299, Length=125, Percent_Identity=27.2, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 42907; Mature: 42907

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQDAITKNVVIPGQVLQSLIQRQMSGTMTIYDPLDESVFWQLYFGGGKLHFATSGMGK
CCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCEEEEEECCCCH
RERLTYLLGQLFPKAKFPMGDSFSQDYDYICQIWKAGKLSLQQVRQVLFFTTQEAIAQFL
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
SLPRAAIKFERALNLDPLLLSLSLKEMVRPIQPTVRQWVQLRPEIASPFQRLQVKDFREI
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RSRSWLNLQDYQFMESLREPLDQQVTLYELSHHTRRSTLELSQLFHPLVKTGLIEVIPYA
HHCCCCCCHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVPQKPKPRIACIDDSKSIQRVVKMTLEASGFEVIGVTEPALSLSTFARQRPELILMDIN
CCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECC
MPEIDGYELCRLFNQSEMLRDIPVVMLTGRDGIIDRLRAKMVGASDYIAKPFNPQDLIRM
CCCCCHHHHHHHHCHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHCCCCCHHHHHHH
VQSYVEQTSAQSTP
HHHHHHHHCCCCCC
>Mature Secondary Structure
MKVQDAITKNVVIPGQVLQSLIQRQMSGTMTIYDPLDESVFWQLYFGGGKLHFATSGMGK
CCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCEEEEEECCCCH
RERLTYLLGQLFPKAKFPMGDSFSQDYDYICQIWKAGKLSLQQVRQVLFFTTQEAIAQFL
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
SLPRAAIKFERALNLDPLLLSLSLKEMVRPIQPTVRQWVQLRPEIASPFQRLQVKDFREI
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RSRSWLNLQDYQFMESLREPLDQQVTLYELSHHTRRSTLELSQLFHPLVKTGLIEVIPYA
HHCCCCCCHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVPQKPKPRIACIDDSKSIQRVVKMTLEASGFEVIGVTEPALSLSTFARQRPELILMDIN
CCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECC
MPEIDGYELCRLFNQSEMLRDIPVVMLTGRDGIIDRLRAKMVGASDYIAKPFNPQDLIRM
CCCCCHHHHHHHHCHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHCCCCCHHHHHHH
VQSYVEQTSAQSTP
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1608976; 11237320; 11759840 [H]