| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078878
Identifier: 170078878
GI number: 170078878
Start: 2364427
End: 2365281
Strand: Direct
Name: 170078878
Synonym: SYNPCC7002_A2282
Alternate gene names: NA
Gene position: 2364427-2365281 (Clockwise)
Preceding gene: 170078877
Following gene: 170078880
Centisome position: 78.6
GC content: 53.92
Gene sequence:
>855_bases TTGAAACGATTTTGGCATCTCTGTAAAACCACCCCAGCACCCCTGCGGCTGGGACTTTTTTTCTTGAGTTTGGGGATCAT CTGGCTTCCCCTCGCGGCCCCGTTGTACCTGATTTTTCGCGCCGACGAGAATCTAACCACCATCCTGACCATGGGACTGC TGTTCCTTGAGTTTCTGGTCTATCTTCCCTTCTGGGTGAAACAAGTCCACGGGGAAACGCAACCCTTCCGGCGCTATGGT TTGGTGTGGCAGCGGGCGAATGGCGTGGATTTGGTTACAGGTTTGGCCTACGGTCTGGGGTTTACCTGGGCACTGCTGAT TTTTGAAGATGTGCTGGGTTTTATCGAGATTATTCCCCCCACAACGGCCTTGATTCGCATTGTGATCGAAGGAGCCTTGA GCGGTCTGGGAGTGGCCCTCGCAGAAGAATTGGTCTTTCGGGGCTGGGTTTATGACGAGCTAGAGCGGGACTATGGCTCA AAAATAGTGCTTTGGGGCAGTGCGATTGCCTTTGCGATTTTGCACTTCTTGAAACCCCTCCCGGAGATGATCCGAACGCT TCCGGTATTTCCCGGTCTGGTTTTGTTGGGATTAACTCTGGTCTGGGCGAAGCGATCGCGGTTCGGTCGCCTCGGCAAAC CTATCGGTCTCCATGGGGGCTTAGTTTGGGGCTATTACATTTTTAATGTGGGCGGCTTAATTCAATCCAAAGAAGGTGTT TCCCCTTGGCTCACAGGGGTCGATGGGAATCCCCTCGGTGGTCTCTGGGGCATTCTCTTCCTTGCCGTTCTCGCCTGGAT CATGGCCCGTGCCGCCCAAAAATCCCAAAAACCCTCTCCCCTAGAGGGGAGCTAG
Upstream 100 bases:
>100_bases GACGAGTAGAGATATTTTGCTTTTTTGATCAAGGCGATCGCCAGATTGCGGCCCAGAAACAGATTAAATAGAAGGTGGCA AACCTCAACGACTTTTTCCC
Downstream 100 bases:
>100_bases AGGGGTGGCCCCTTGAGGGGAGTTAGAGGAGTTTCAAGAGGAAAGTACCTTACTGAGCTTTGTGACCTTTCCCAAAGAAT TTCGGCGGTTCTGCTAGGGT
Product: CAAX amino terminal protease family protein
Products: NA
Alternate protein names: CAAX Amino Terminal Protease Family; CAAX Amino Terminal Protease Family Protein; Abortive Infection Protein Like
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MKRFWHLCKTTPAPLRLGLFFLSLGIIWLPLAAPLYLIFRADENLTTILTMGLLFLEFLVYLPFWVKQVHGETQPFRRYG LVWQRANGVDLVTGLAYGLGFTWALLIFEDVLGFIEIIPPTTALIRIVIEGALSGLGVALAEELVFRGWVYDELERDYGS KIVLWGSAIAFAILHFLKPLPEMIRTLPVFPGLVLLGLTLVWAKRSRFGRLGKPIGLHGGLVWGYYIFNVGGLIQSKEGV SPWLTGVDGNPLGGLWGILFLAVLAWIMARAAQKSQKPSPLEGS
Sequences:
>Translated_284_residues MKRFWHLCKTTPAPLRLGLFFLSLGIIWLPLAAPLYLIFRADENLTTILTMGLLFLEFLVYLPFWVKQVHGETQPFRRYG LVWQRANGVDLVTGLAYGLGFTWALLIFEDVLGFIEIIPPTTALIRIVIEGALSGLGVALAEELVFRGWVYDELERDYGS KIVLWGSAIAFAILHFLKPLPEMIRTLPVFPGLVLLGLTLVWAKRSRFGRLGKPIGLHGGLVWGYYIFNVGGLIQSKEGV SPWLTGVDGNPLGGLWGILFLAVLAWIMARAAQKSQKPSPLEGS >Mature_284_residues MKRFWHLCKTTPAPLRLGLFFLSLGIIWLPLAAPLYLIFRADENLTTILTMGLLFLEFLVYLPFWVKQVHGETQPFRRYG LVWQRANGVDLVTGLAYGLGFTWALLIFEDVLGFIEIIPPTTALIRIVIEGALSGLGVALAEELVFRGWVYDELERDYGS KIVLWGSAIAFAILHFLKPLPEMIRTLPVFPGLVLLGLTLVWAKRSRFGRLGKPIGLHGGLVWGYYIFNVGGLIQSKEGV SPWLTGVDGNPLGGLWGILFLAVLAWIMARAAQKSQKPSPLEGS
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31604; Mature: 31604
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFWHLCKTTPAPLRLGLFFLSLGIIWLPLAAPLYLIFRADENLTTILTMGLLFLEFLV CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHH YLPFWVKQVHGETQPFRRYGLVWQRANGVDLVTGLAYGLGFTWALLIFEDVLGFIEIIPP HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TTALIRIVIEGALSGLGVALAEELVFRGWVYDELERDYGSKIVLWGSAIAFAILHFLKPL HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH PEMIRTLPVFPGLVLLGLTLVWAKRSRFGRLGKPIGLHGGLVWGYYIFNVGGLIQSKEGV HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHCCCCCC SPWLTGVDGNPLGGLWGILFLAVLAWIMARAAQKSQKPSPLEGS CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKRFWHLCKTTPAPLRLGLFFLSLGIIWLPLAAPLYLIFRADENLTTILTMGLLFLEFLV CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHH YLPFWVKQVHGETQPFRRYGLVWQRANGVDLVTGLAYGLGFTWALLIFEDVLGFIEIIPP HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TTALIRIVIEGALSGLGVALAEELVFRGWVYDELERDYGSKIVLWGSAIAFAILHFLKPL HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH PEMIRTLPVFPGLVLLGLTLVWAKRSRFGRLGKPIGLHGGLVWGYYIFNVGGLIQSKEGV HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHCCCCCC SPWLTGVDGNPLGGLWGILFLAVLAWIMARAAQKSQKPSPLEGS CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA