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The map label for this gene is cpcC

Identifier: 170078809

GI number: 170078809

Start: 2301838

End: 2302710

Strand: Direct

Name: cpcC

Synonym: SYNPCC7002_A2211

Alternate gene names: 170078809

Gene position: 2301838-2302710 (Clockwise)

Preceding gene: 170078808

Following gene: 170078810

Centisome position: 76.52

GC content: 49.71

Gene sequence:

>873_bases
ATGCCAGTTACTGTCGCTGCCTCTCGCTTGGGAACCGCTGCGTTTGACCAATCACCCGTCGAACTGCGCGCTAACTATTC
TCGAGATGATGCACAAACCGTCATCCGCGCCGTTTATCGCCAGGTTTTAGGCAATGACTATGTCATGTCTTCTGAGCGTT
TAACAGCTGCGGAATCTTTGTTCACGAATGGGTTTATTTCTGTGCGGGATTTTGTCCGTGCTGTGGCCCAGTCTGAGCTA
TATAAAGAAAAGTTTTTATACAACAATTTCCAAACCCGTGTGATTGAACTGAACTTCAAGCACTTGTTGGGTCGGGCCCC
CTACGATGAAGCAGAGGTGATTGAGCACCTCGATCGCTATCAAAATGAAGGGTTTGAAGCTGATATCAATTCTTACATTG
ATAGCGCTGAATATACGGAAAACTTCGGGGACAACATTGTGCCCTACATCCGTAGTTATGTTGTTCAAACTGGACATCGT
ACCGTTGGTTTTACCCGGATGTTTAGTCTACAACGGGGTTATGCCAACAGCGATCGCGCTCAGATTGCGGGGAATGCTTC
TCGCTTAGCCCAAGAGCTCGCTCGTAATACTACTTCTGCGGTGGTTGGGCCTTCTGGTGTTAACGAAGGTTGGGCTTTCC
GGTCTGCGGCTGATGATTATCATCCTGGTCAATCCCTTGGTGGTTCCACTGGCTTAAGTGCGGATGACCAGGTTGTCCGG
GTTGAAGTTGCTGCGTTGTCTACGCCCCGTTATCCTCGGATTCGCCGTAGCAGTCGCGTTTTCTTCGTACCGGTATCTCG
TCTGTCTCAGAAGCTGCAAGAAATTCAGCGGATGGGCGGTAGAGTCGCCAGTATTTCACCTGCTGGCCAGTAA

Upstream 100 bases:

>100_bases
CGGATGGGTAAGTGGTTTTCAGCTTAAGTGTTGGGTTCTACTTACTTCTCCGGGTCTTGCTCTATCTAAAAACATTGGTT
TAACAAGGAGTATTAGGCAA

Downstream 100 bases:

>100_bases
AGGTTAGAGGTCTCGTTTTCGCGTGATCTCTGAGTTGTTACCGGAGTGGGTAATTGATGAAAATCAGGGACAAAATTTGA
GAGGGGGTCTAAGCTTCTCG

Product: phycocyanin-associated rod linker protein

Products: NA

Alternate protein names: L-R 32.3

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MPVTVAASRLGTAAFDQSPVELRANYSRDDAQTVIRAVYRQVLGNDYVMSSERLTAAESLFTNGFISVRDFVRAVAQSEL
YKEKFLYNNFQTRVIELNFKHLLGRAPYDEAEVIEHLDRYQNEGFEADINSYIDSAEYTENFGDNIVPYIRSYVVQTGHR
TVGFTRMFSLQRGYANSDRAQIAGNASRLAQELARNTTSAVVGPSGVNEGWAFRSAADDYHPGQSLGGSTGLSADDQVVR
VEVAALSTPRYPRIRRSSRVFFVPVSRLSQKLQEIQRMGGRVASISPAGQ

Sequences:

>Translated_290_residues
MPVTVAASRLGTAAFDQSPVELRANYSRDDAQTVIRAVYRQVLGNDYVMSSERLTAAESLFTNGFISVRDFVRAVAQSEL
YKEKFLYNNFQTRVIELNFKHLLGRAPYDEAEVIEHLDRYQNEGFEADINSYIDSAEYTENFGDNIVPYIRSYVVQTGHR
TVGFTRMFSLQRGYANSDRAQIAGNASRLAQELARNTTSAVVGPSGVNEGWAFRSAADDYHPGQSLGGSTGLSADDQVVR
VEVAALSTPRYPRIRRSSRVFFVPVSRLSQKLQEIQRMGGRVASISPAGQ
>Mature_289_residues
PVTVAASRLGTAAFDQSPVELRANYSRDDAQTVIRAVYRQVLGNDYVMSSERLTAAESLFTNGFISVRDFVRAVAQSELY
KEKFLYNNFQTRVIELNFKHLLGRAPYDEAEVIEHLDRYQNEGFEADINSYIDSAEYTENFGDNIVPYIRSYVVQTGHRT
VGFTRMFSLQRGYANSDRAQIAGNASRLAQELARNTTSAVVGPSGVNEGWAFRSAADDYHPGQSLGGSTGLSADDQVVRV
EVAALSTPRYPRIRRSSRVFFVPVSRLSQKLQEIQRMGGRVASISPAGQ

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYR1_SYNP2 (Q05237)

Other databases:

- EMBL:   X81868
- EMBL:   CP000951
- PIR:   B60662
- RefSeq:   YP_001735447.1
- GeneID:   6055779
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2211
- HOGENOM:   HBG287806
- OMA:   NFQTRVI
- ProtClustDB:   CLSK892735
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- PIRSF:   PIRSF005898
- ProDom:   PD000852

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly

EC number: NA

Molecular weight: Translated: 32273; Mature: 32142

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS51441 CPCD_LIKE; PS51445 PBS_LINKER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTVAASRLGTAAFDQSPVELRANYSRDDAQTVIRAVYRQVLGNDYVMSSERLTAAESL
CCCEECHHHHCHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHH
FTNGFISVRDFVRAVAQSELYKEKFLYNNFQTRVIELNFKHLLGRAPYDEAEVIEHLDRY
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHH
QNEGFEADINSYIDSAEYTENFGDNIVPYIRSYVVQTGHRTVGFTRMFSLQRGYANSDRA
HCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
QIAGNASRLAQELARNTTSAVVGPSGVNEGWAFRSAADDYHPGQSLGGSTGLSADDQVVR
HHCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VEVAALSTPRYPRIRRSSRVFFVPVSRLSQKLQEIQRMGGRVASISPAGQ
EEEEECCCCCCCCHHCCCEEEEEEHHHHHHHHHHHHHHCCEEECCCCCCC
>Mature Secondary Structure 
PVTVAASRLGTAAFDQSPVELRANYSRDDAQTVIRAVYRQVLGNDYVMSSERLTAAESL
CCEECHHHHCHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHH
FTNGFISVRDFVRAVAQSELYKEKFLYNNFQTRVIELNFKHLLGRAPYDEAEVIEHLDRY
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHH
QNEGFEADINSYIDSAEYTENFGDNIVPYIRSYVVQTGHRTVGFTRMFSLQRGYANSDRA
HCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
QIAGNASRLAQELARNTTSAVVGPSGVNEGWAFRSAADDYHPGQSLGGSTGLSADDQVVR
HHCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VEVAALSTPRYPRIRRSSRVFFVPVSRLSQKLQEIQRMGGRVASISPAGQ
EEEEECCCCCCCCHHCCCEEEEEEHHHHHHHHHHHHHHCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2114862; 2164365