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The map label for this gene is cpcA

Identifier: 170078808

GI number: 170078808

Start: 2301231

End: 2301719

Strand: Direct

Name: cpcA

Synonym: SYNPCC7002_A2210

Alternate gene names: 170078808

Gene position: 2301231-2301719 (Clockwise)

Preceding gene: 170078807

Following gene: 170078809

Centisome position: 76.5

GC content: 50.92

Gene sequence:

>489_bases
ATGAAAACCCCTCTTACCGAAGCAGTAGCACTCGCTGATTCTCAAGGCCGTTTCCTCAGCAACACTGAGCTCCAGTACCT
CTATGGTCGTCTTCGTCAAGGTGCTTTCGCCCTTGAAGCGGCTCAAACGTTGACTGCAAAAGCTGACACCCTCGTTAATG
GTGCTGCTCAAGCGGTTTACAGCAAGTTCCCCTACACCACCAGCACTCCTGGCAACAACTTCGCTGCTGACCAGCGCGGT
AAAGACAAGTGTGCTCGTGACATCGGTTACTACCTCCGCATGGTTACCTACTGCCTAGTTGCTGGTGGTACTGGCCCCAT
GGATGAGTACCTCATCGCTGGTGTTGACGAAATCAACCGTACTTTCGATCTTTCTCCCAGCTGGTATGTTGAAGCTCTCA
AGCACATCAAAGCAAACCATGGTTTGACTGGCGATGCTGCTACTGAAACTAACAACTACATCGACTACGCAATTAACGCC
CTCAGCTAA

Upstream 100 bases:

>100_bases
TTTAATTCAACTCTGACATTTTTCGTTTTAAGTCTTACCGATACCGTAAGACGCTCTTTTAAAGAAAATTATTGATAATC
CATAGGGAGATAATCTGACA

Downstream 100 bases:

>100_bases
TTTTGCTTAGTCTAGGCCCGGATGGGTAAGTGGTTTTCAGCTTAAGTGTTGGGTTCTACTTACTTCTCCGGGTCTTGCTC
TATCTAAAAACATTGGTTTA

Product: phycocyanin, alpha subunit

Products: NA

Alternate protein names: alpa-PC

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKTPLTEAVALADSQGRFLSNTELQYLYGRLRQGAFALEAAQTLTAKADTLVNGAAQAVYSKFPYTTSTPGNNFAADQRG
KDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGVDEINRTFDLSPSWYVEALKHIKANHGLTGDAATETNNYIDYAINA
LS

Sequences:

>Translated_162_residues
MKTPLTEAVALADSQGRFLSNTELQYLYGRLRQGAFALEAAQTLTAKADTLVNGAAQAVYSKFPYTTSTPGNNFAADQRG
KDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGVDEINRTFDLSPSWYVEALKHIKANHGLTGDAATETNNYIDYAINA
LS
>Mature_162_residues
MKTPLTEAVALADSQGRFLSNTELQYLYGRLRQGAFALEAAQTLTAKADTLVNGAAQAVYSKFPYTTSTPGNNFAADQRG
KDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGVDEINRTFDLSPSWYVEALKHIKANHGLTGDAATETNNYIDYAINA
LS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHCA_SYNP2 (P03943)

Other databases:

- EMBL:   K02660
- EMBL:   K02659
- EMBL:   CP000951
- EMBL:   X81868
- PIR:   A94024
- RefSeq:   YP_001735446.1
- ProteinModelPortal:   P03943
- SMR:   P03943
- GeneID:   6055672
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2210
- HOGENOM:   HBG635139
- OMA:   TYCLVAG
- GO:   GO:0030089
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006246
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081
- TIGRFAMs:   TIGR01338

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 17622; Mature: 17622

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: BINDING 84-84

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPLTEAVALADSQGRFLSNTELQYLYGRLRQGAFALEAAQTLTAKADTLVNGAAQAVY
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SKFPYTTSTPGNNFAADQRGKDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGVDEINR
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHCC
TFDLSPSWYVEALKHIKANHGLTGDAATETNNYIDYAINALS
EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEECCC
>Mature Secondary Structure
MKTPLTEAVALADSQGRFLSNTELQYLYGRLRQGAFALEAAQTLTAKADTLVNGAAQAVY
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SKFPYTTSTPGNNFAADQRGKDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGVDEINR
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHCC
TFDLSPSWYVEALKHIKANHGLTGDAATETNNYIDYAINALS
EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6096868; 6438628; 2114862