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The map label for this gene is cpcD

Identifier: 170078810

GI number: 170078810

Start: 2302889

End: 2303131

Strand: Direct

Name: cpcD

Synonym: SYNPCC7002_A2212

Alternate gene names: 170078810

Gene position: 2302889-2303131 (Clockwise)

Preceding gene: 170078809

Following gene: 170078811

Centisome position: 76.56

GC content: 46.09

Gene sequence:

>243_bases
ATGTTGAGTCAATTTGCGAATGGAACGGAAGCGGCTTCGCGTGTTTTTACCTACGAAGTGCAAGGGCTGCGCCAAACAGA
AGAAACAGACAATCAAGAATACGCCTTTCGTCGCAGTGGTAGTGTTTTTATCAATGTGCCCTATGCTCGGATGAATCAAG
AGATGCAACGGATTTTGCGTCTAGGCGGCAAGATTGTTTCGATTAAACCTTATACGGGTGCGACTGCTTCTGACGAGGAA
TAA

Upstream 100 bases:

>100_bases
GAGAGGGGGTCTAAGCTTCTCGATTTTGTGCCTGGTTTTGGCGACTTTACCTTAAGCGTTTATTGTACATAAATCTTTTA
CGGAGTTCCAAGAAAGAACC

Downstream 100 bases:

>100_bases
TTTTGTTGTTTCTTTCTGTCGCTGAATAAGCTTAATAACATTGTTGTTTTGAATATTTTTTCTAGACGGGGTAGCAGTGC
TTTGGTTTTAGTGCTGTTGC

Product: phycocyanin-associated, rod-terminating linker protein CpcD

Products: NA

Alternate protein names: L-8.9/R; Rod-capping linker protein

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MLSQFANGTEAASRVFTYEVQGLRQTEETDNQEYAFRRSGSVFINVPYARMNQEMQRILRLGGKIVSIKPYTGATASDEE

Sequences:

>Translated_80_residues
MLSQFANGTEAASRVFTYEVQGLRQTEETDNQEYAFRRSGSVFINVPYARMNQEMQRILRLGGKIVSIKPYTGATASDEE
>Mature_80_residues
MLSQFANGTEAASRVFTYEVQGLRQTEETDNQEYAFRRSGSVFINVPYARMNQEMQRILRLGGKIVSIKPYTGATASDEE

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYS1_SYNP2 (P31966)

Other databases:

- EMBL:   M93569
- EMBL:   X55756
- EMBL:   CP000951
- RefSeq:   YP_001735448.1
- GeneID:   6055822
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2212
- HOGENOM:   HBG438425
- OMA:   MNEEMQR
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR008213

Pfam domain/function: PF01383 CpcD

EC number: NA

Molecular weight: Translated: 9055; Mature: 9055

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS51441 CPCD_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQFANGTEAASRVFTYEVQGLRQTEETDNQEYAFRRSGSVFINVPYARMNQEMQRILR
CCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHH
LGGKIVSIKPYTGATASDEE
HCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLSQFANGTEAASRVFTYEVQGLRQTEETDNQEYAFRRSGSVFINVPYARMNQEMQRILR
CCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHH
LGGKIVSIKPYTGATASDEE
HCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1644801; 2118804