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The map label for this gene is yddU [C]

Identifier: 170078765

GI number: 170078765

Start: 2247808

End: 2248635

Strand: Direct

Name: yddU [C]

Synonym: SYNPCC7002_A2167

Alternate gene names: 170078765

Gene position: 2247808-2248635 (Clockwise)

Preceding gene: 170078764

Following gene: 170078766

Centisome position: 74.73

GC content: 47.83

Gene sequence:

>828_bases
ATGGCAACTGTATTCCCCCAAGAACGACGTTTTTTAGAATTAGCCCTTGCCCAGGCGATCGCCCGCCATCAGTTGACCGT
CGTTTACCAGCCCCAAGTCAATCCTCAAACGACGATGGTGACGGGATTTGAAGCTCTACTCCGGTGGGATCACCCCCAGT
TCGGTTCGATTTCTCCCACGGTATTTATCCCCATTGCCGAAGAAGCGGGTCTGATCCACGAGCTTGGGGACTGGGTCTTG
CAGCGGGCCATAAAACAGTTAAAAAAATGGCATCAACAGTCCCAGCAAACCTTTCGGATGGCCGTTAATATTTCGGTACA
TCAGGTCACGGCTCCTCACTTCTTTGAGCGGCTCCAGGATCTCCTGGTTTCCCATCAAGTTGCGCCCCAACATCTAGAGC
TAGAGATCACGGAGTCAGTTTTGATTGAGGATTTTCAAAATATCTGCGCCGTTTTAGCATCACTGCAAAAATTAGGCGTC
AAGATTGCCATTGATGACTTCGGTACAGGCTATGCTTCTTTTAATTACACCAGGTTGTTTGGCTGGGATACCCTGAAGTT
AGACCGCTGCTTCATTAAAAATTTACATTGTAATAAAGTGAATTCGGCGATCACCAAAAATCTCATTAATATGTCCCATG
ATCTGGGGTTCAAGGTGGTTGCTGAGGGCATCGAACATCCAGAAGAATTGGCAATGCTCAAGCAGTTTTGTTGTGATGAA
GTCCAGGGATATTACTTTAGTCGCCCCCTCATGCCAGCTCTACTCGAAATTCAGCAGATTACGGGTGGTCATTTGATGCC
TGGGGCGATCGCCTATTTAGCTGCCTGA

Upstream 100 bases:

>100_bases
TTGGGCGTAAAGCTCGATACCAGCGAACCTCTCCTTGCTGGACGACATATATGGTTGTCCTACGCTTGATTCAAAAAGGT
GTGACGGATAAAAACTGACT

Downstream 100 bases:

>100_bases
GTTAAACATAGTCCGTTGCAGTAAAGCCTCGTGACAGATCACCTGTTCGATTAAGTGTGACGGTGATTGCTCAAAATTGA
TCAGCAAAATTTTTCAGAGA

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MATVFPQERRFLELALAQAIARHQLTVVYQPQVNPQTTMVTGFEALLRWDHPQFGSISPTVFIPIAEEAGLIHELGDWVL
QRAIKQLKKWHQQSQQTFRMAVNISVHQVTAPHFFERLQDLLVSHQVAPQHLELEITESVLIEDFQNICAVLASLQKLGV
KIAIDDFGTGYASFNYTRLFGWDTLKLDRCFIKNLHCNKVNSAITKNLINMSHDLGFKVVAEGIEHPEELAMLKQFCCDE
VQGYYFSRPLMPALLEIQQITGGHLMPGAIAYLAA

Sequences:

>Translated_275_residues
MATVFPQERRFLELALAQAIARHQLTVVYQPQVNPQTTMVTGFEALLRWDHPQFGSISPTVFIPIAEEAGLIHELGDWVL
QRAIKQLKKWHQQSQQTFRMAVNISVHQVTAPHFFERLQDLLVSHQVAPQHLELEITESVLIEDFQNICAVLASLQKLGV
KIAIDDFGTGYASFNYTRLFGWDTLKLDRCFIKNLHCNKVNSAITKNLINMSHDLGFKVVAEGIEHPEELAMLKQFCCDE
VQGYYFSRPLMPALLEIQQITGGHLMPGAIAYLAA
>Mature_274_residues
ATVFPQERRFLELALAQAIARHQLTVVYQPQVNPQTTMVTGFEALLRWDHPQFGSISPTVFIPIAEEAGLIHELGDWVLQ
RAIKQLKKWHQQSQQTFRMAVNISVHQVTAPHFFERLQDLLVSHQVAPQHLELEITESVLIEDFQNICAVLASLQKLGVK
IAIDDFGTGYASFNYTRLFGWDTLKLDRCFIKNLHCNKVNSAITKNLINMSHDLGFKVVAEGIEHPEELAMLKQFCCDEV
QGYYFSRPLMPALLEIQQITGGHLMPGAIAYLAA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=34.8360655737705, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1787541, Length=244, Percent_Identity=35.2459016393443, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=29.535864978903, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=34.9137931034483, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=31.0924369747899, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=35.8870967741936, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=30.0813008130081, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=30.5084745762712, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI226510982, Length=247, Percent_Identity=30.7692307692308, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=31.063829787234, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788849, Length=219, Percent_Identity=32.4200913242009, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=231, Percent_Identity=27.2727272727273, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787410, Length=235, Percent_Identity=24.6808510638298, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 31166; Mature: 31035

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVFPQERRFLELALAQAIARHQLTVVYQPQVNPQTTMVTGFEALLRWDHPQFGSISPT
CCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
VFIPIAEEAGLIHELGDWVLQRAIKQLKKWHQQSQQTFRMAVNISVHQVTAPHFFERLQD
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHH
LLVSHQVAPQHLELEITESVLIEDFQNICAVLASLQKLGVKIAIDDFGTGYASFNYTRLF
HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEE
GWDTLKLDRCFIKNLHCNKVNSAITKNLINMSHDLGFKVVAEGIEHPEELAMLKQFCCDE
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
VQGYYFSRPLMPALLEIQQITGGHLMPGAIAYLAA
HCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCC
>Mature Secondary Structure 
ATVFPQERRFLELALAQAIARHQLTVVYQPQVNPQTTMVTGFEALLRWDHPQFGSISPT
CCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
VFIPIAEEAGLIHELGDWVLQRAIKQLKKWHQQSQQTFRMAVNISVHQVTAPHFFERLQD
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHH
LLVSHQVAPQHLELEITESVLIEDFQNICAVLASLQKLGVKIAIDDFGTGYASFNYTRLF
HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEE
GWDTLKLDRCFIKNLHCNKVNSAITKNLINMSHDLGFKVVAEGIEHPEELAMLKQFCCDE
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
VQGYYFSRPLMPALLEIQQITGGHLMPGAIAYLAA
HCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]