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The map label for this gene is sigH [H]

Identifier: 170078712

GI number: 170078712

Start: 2189831

End: 2190430

Strand: Reverse

Name: sigH [H]

Synonym: SYNPCC7002_A2111

Alternate gene names: 170078712

Gene position: 2190430-2189831 (Counterclockwise)

Preceding gene: 170078714

Following gene: 170078711

Centisome position: 72.82

GC content: 52.17

Gene sequence:

>600_bases
ATGCCCGATCAAGCTGTTGACCACCCTACTGCCATTTCGGATAGGGAATTGGTTTGTCTTTGCCAAGGGAAAATAGGGTC
TATTCGGGGGCGGCGCGATCGCCAAAGTTTCCGAATCCTGTACCGACGCTATCACCAAAAGGTACGGTCTACCCTGTATC
AACTCTGTGGGGTGGCGCTCTTGGATGATTTAGTTCAAGAGGTTTTTTTAAAGGCCTGGCAGGGGCTCCCGCGCCTCAAA
AATCCGGACTATTTTGCCACCTGGTTGTACCGCATTACTTGGAATGTGGCGACGGATCAACGGCGACGCTTTGCGAAGCA
GATGACCTTAATCACAGGCTTAGAGGCGCAAATTGGTGCGGTGACAGATCCTAGGCCGGAGGGGCTGGGTCAAATTTATT
ATCAAGATTTGGTGCAACGGGGTTTGCAATCGCTAAGCTTGGAACACCGGGCGGTCTTGGTGCTCCATGATCTCAAGGAT
CTGCCCCAAAAGGAGGTGGCTGAAATTCTTGGGATTCCGCCAGGAACGGTGAAATCTCGCCTCCACCATGCCCGACGATC
GCTGCGTCAGTTTTTAGAAACCCAAGGAGTCAGTCTATGA

Upstream 100 bases:

>100_bases
TTTGGATTTGGCAATACCTTGGTTCAAGTTTTTTTTGAGCCGGTTGAACTTTTTGGGTAAAGGTTCAGTCTAAAGGGACG
TGCGATGACTGGAGAGGGAT

Downstream 100 bases:

>100_bases
ATTTCCATGACCATGACAACTTAATTCGGTTTTTAAAGAACCACGAACCCTACGGGCCACCGCCACCAGGGGATCACGAA
GAAAGGCTTTTGGCACGACT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MPDQAVDHPTAISDRELVCLCQGKIGSIRGRRDRQSFRILYRRYHQKVRSTLYQLCGVALLDDLVQEVFLKAWQGLPRLK
NPDYFATWLYRITWNVATDQRRRFAKQMTLITGLEAQIGAVTDPRPEGLGQIYYQDLVQRGLQSLSLEHRAVLVLHDLKD
LPQKEVAEILGIPPGTVKSRLHHARRSLRQFLETQGVSL

Sequences:

>Translated_199_residues
MPDQAVDHPTAISDRELVCLCQGKIGSIRGRRDRQSFRILYRRYHQKVRSTLYQLCGVALLDDLVQEVFLKAWQGLPRLK
NPDYFATWLYRITWNVATDQRRRFAKQMTLITGLEAQIGAVTDPRPEGLGQIYYQDLVQRGLQSLSLEHRAVLVLHDLKD
LPQKEVAEILGIPPGTVKSRLHHARRSLRQFLETQGVSL
>Mature_198_residues
PDQAVDHPTAISDRELVCLCQGKIGSIRGRRDRQSFRILYRRYHQKVRSTLYQLCGVALLDDLVQEVFLKAWQGLPRLKN
PDYFATWLYRITWNVATDQRRRFAKQMTLITGLEAQIGAVTDPRPEGLGQIYYQDLVQRGLQSLSLEHRAVLVLHDLKDL
PQKEVAEILGIPPGTVKSRLHHARRSLRQFLETQGVSL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=165, Percent_Identity=30.9090909090909, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22927; Mature: 22796

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDQAVDHPTAISDRELVCLCQGKIGSIRGRRDRQSFRILYRRYHQKVRSTLYQLCGVAL
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDDLVQEVFLKAWQGLPRLKNPDYFATWLYRITWNVATDQRRRFAKQMTLITGLEAQIGA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCC
VTDPRPEGLGQIYYQDLVQRGLQSLSLEHRAVLVLHDLKDLPQKEVAEILGIPPGTVKSR
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHH
LHHARRSLRQFLETQGVSL
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PDQAVDHPTAISDRELVCLCQGKIGSIRGRRDRQSFRILYRRYHQKVRSTLYQLCGVAL
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDDLVQEVFLKAWQGLPRLKNPDYFATWLYRITWNVATDQRRRFAKQMTLITGLEAQIGA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCC
VTDPRPEGLGQIYYQDLVQRGLQSLSLEHRAVLVLHDLKDLPQKEVAEILGIPPGTVKSR
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHH
LHHARRSLRQFLETQGVSL
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]