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The map label for this gene is ydcM [C]

Identifier: 170078708

GI number: 170078708

Start: 2184454

End: 2185626

Strand: Reverse

Name: ydcM [C]

Synonym: SYNPCC7002_A2107

Alternate gene names: 170078708

Gene position: 2185626-2184454 (Counterclockwise)

Preceding gene: 170078710

Following gene: 170078704

Centisome position: 72.66

GC content: 48.51

Gene sequence:

>1173_bases
ATGCTCAACCTAACTTACGAGTACAGAGCTTATCCAACTGCCGACCAAGCCCTTCAAATGGCTCAATGGTTGAACACCTG
CCGCCGTGTGTATAATTACGCGCTGGCGGAACGTCGTGATTGGATTCAGGCCCGTAAGTGCCCCGTTAATGCTTGTAGTA
TCCAGCGGGAATTTATTTATCCCATGGATGCGGAAAAACCGACTTATTACAGTCAAAAGCGAAATTTGACCGCTGCGCGA
AAAGAGAATCCTTTTCTGCAAAACGTCCATTCTCAAGTGCTTCAAGATGTCATGGGTCGGCTAGAAAGGGCATTTAACGC
CCTGTGGAATAGTGGGTTTGGATTCCCAAGGTTTAAGAAGCGTTTTCGCAGCTTTAACTTCCCACAGTTGGGCAAAAACC
CAATTGGTGACAATCAAATTAAGTTGCCTGTATTTGGTTGGGTTAAGACCGTGATGCACCGCCCAATCCCTGATGGGTTT
GAGGTGAAGCAAGCACGGGTAGTTAAACGCGCTTCTGGCTGGTATATCCAGTTGGTAATCCAAAGCGATGTAAAGATTCC
AGATCCCCCGATTGGTGGTTATGCCATCGGGATTGATGTGGGGTTAAATCATTTTGTTGCGACATCAGACAACGAGTTAA
TTGGGAGACCCCGATTCTTTGTGGAGGCACAACACAGGCTGAAAGTGCTGAACCGTGCCGTTGCCAGAAAGCAAAAAGGG
TCAAAGAACCAGCAAAAAGCTCGTCAACGAGTCGCAAGATTTTACGAACGAATTGCTAACCGGCGTAAAGACTTCCATCA
CAAGCTCGCCCATCATCTCTGTGATCAAGCAGGCATGATATTTGCGGAGGAGTTGAACCTTAAAGGACTGGCTAAAGGAA
TGCTGGGTAAGCATTGCCTTGACGCTGGTTGGGGACAATTCCTCGATACGCTCAAATGGGTTTGCTTTAAGCGTGGTGTG
TATTTCCAGAAAGTTGCCGCCCATGGCACTAGCCAGGAATGCCCAGCCTGCGGAGTGGCGGTGAAAAAAGATTTGTCTAT
GCGTCGGCATGAATGCCCGGAATGCGGCTACACCACTAATCGAGATGTAGCCAGCGGGCAAGTGATTCGCAATCGTGGAC
TAGCTAGCACTGAGCATGTTGCTGAGCATGTTGCTGAGCATGTCGAAGTGTAG

Upstream 100 bases:

>100_bases
GGATGAAGAGCGAGCGACTGACCAACGGGAGGAAGCAAACTTCCAATAAGTAGTCTTAGGGACTGGCGCAACGTCCCTAA
GTATTTGCTACAATAGGAGC

Downstream 100 bases:

>100_bases
CGGTTGGACAGACCGTTCAATCCTGTGGAGCTACGCCCAGTAGGGAGGCTTTGAAGCAGGAATCTCTTAAGGCGACTTAA
GAAGCCCACGCTGTCTCGTA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MLNLTYEYRAYPTADQALQMAQWLNTCRRVYNYALAERRDWIQARKCPVNACSIQREFIYPMDAEKPTYYSQKRNLTAAR
KENPFLQNVHSQVLQDVMGRLERAFNALWNSGFGFPRFKKRFRSFNFPQLGKNPIGDNQIKLPVFGWVKTVMHRPIPDGF
EVKQARVVKRASGWYIQLVIQSDVKIPDPPIGGYAIGIDVGLNHFVATSDNELIGRPRFFVEAQHRLKVLNRAVARKQKG
SKNQQKARQRVARFYERIANRRKDFHHKLAHHLCDQAGMIFAEELNLKGLAKGMLGKHCLDAGWGQFLDTLKWVCFKRGV
YFQKVAAHGTSQECPACGVAVKKDLSMRRHECPECGYTTNRDVASGQVIRNRGLASTEHVAEHVAEHVEV

Sequences:

>Translated_390_residues
MLNLTYEYRAYPTADQALQMAQWLNTCRRVYNYALAERRDWIQARKCPVNACSIQREFIYPMDAEKPTYYSQKRNLTAAR
KENPFLQNVHSQVLQDVMGRLERAFNALWNSGFGFPRFKKRFRSFNFPQLGKNPIGDNQIKLPVFGWVKTVMHRPIPDGF
EVKQARVVKRASGWYIQLVIQSDVKIPDPPIGGYAIGIDVGLNHFVATSDNELIGRPRFFVEAQHRLKVLNRAVARKQKG
SKNQQKARQRVARFYERIANRRKDFHHKLAHHLCDQAGMIFAEELNLKGLAKGMLGKHCLDAGWGQFLDTLKWVCFKRGV
YFQKVAAHGTSQECPACGVAVKKDLSMRRHECPECGYTTNRDVASGQVIRNRGLASTEHVAEHVAEHVEV
>Mature_390_residues
MLNLTYEYRAYPTADQALQMAQWLNTCRRVYNYALAERRDWIQARKCPVNACSIQREFIYPMDAEKPTYYSQKRNLTAAR
KENPFLQNVHSQVLQDVMGRLERAFNALWNSGFGFPRFKKRFRSFNFPQLGKNPIGDNQIKLPVFGWVKTVMHRPIPDGF
EVKQARVVKRASGWYIQLVIQSDVKIPDPPIGGYAIGIDVGLNHFVATSDNELIGRPRFFVEAQHRLKVLNRAVARKQKG
SKNQQKARQRVARFYERIANRRKDFHHKLAHHLCDQAGMIFAEELNLKGLAKGMLGKHCLDAGWGQFLDTLKWVCFKRGV
YFQKVAAHGTSQECPACGVAVKKDLSMRRHECPECGYTTNRDVASGQVIRNRGLASTEHVAEHVAEHVEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=313, Percent_Identity=30.9904153354633, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44802; Mature: 44802

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLTYEYRAYPTADQALQMAQWLNTCRRVYNYALAERRDWIQARKCPVNACSIQREFIY
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PMDAEKPTYYSQKRNLTAARKENPFLQNVHSQVLQDVMGRLERAFNALWNSGFGFPRFKK
CCCCCCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RFRSFNFPQLGKNPIGDNQIKLPVFGWVKTVMHRPIPDGFEVKQARVVKRASGWYIQLVI
HHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEE
QSDVKIPDPPIGGYAIGIDVGLNHFVATSDNELIGRPRFFVEAQHRLKVLNRAVARKQKG
ECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
SKNQQKARQRVARFYERIANRRKDFHHKLAHHLCDQAGMIFAEELNLKGLAKGMLGKHCL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHCCHHHHHHHHHHHHHH
DAGWGQFLDTLKWVCFKRGVYFQKVAAHGTSQECPACGVAVKKDLSMRRHECPECGYTTN
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
RDVASGQVIRNRGLASTEHVAEHVAEHVEV
CCCCCCHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNLTYEYRAYPTADQALQMAQWLNTCRRVYNYALAERRDWIQARKCPVNACSIQREFIY
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PMDAEKPTYYSQKRNLTAARKENPFLQNVHSQVLQDVMGRLERAFNALWNSGFGFPRFKK
CCCCCCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RFRSFNFPQLGKNPIGDNQIKLPVFGWVKTVMHRPIPDGFEVKQARVVKRASGWYIQLVI
HHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEE
QSDVKIPDPPIGGYAIGIDVGLNHFVATSDNELIGRPRFFVEAQHRLKVLNRAVARKQKG
ECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
SKNQQKARQRVARFYERIANRRKDFHHKLAHHLCDQAGMIFAEELNLKGLAKGMLGKHCL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHCCHHHHHHHHHHHHHH
DAGWGQFLDTLKWVCFKRGVYFQKVAAHGTSQECPACGVAVKKDLSMRRHECPECGYTTN
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
RDVASGQVIRNRGLASTEHVAEHVAEHVEV
CCCCCCHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]