| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is pcrA [H]
Identifier: 170078704
GI number: 170078704
Start: 2179439
End: 2181688
Strand: Reverse
Name: pcrA [H]
Synonym: SYNPCC7002_A2103
Alternate gene names: 170078704
Gene position: 2181688-2179439 (Counterclockwise)
Preceding gene: 170078708
Following gene: 170078700
Centisome position: 72.53
GC content: 53.96
Gene sequence:
>2250_bases ATGAACCACCTTAGTGTGCATCAACAGCAATTTTTAACGCAACTGGCCGCTGGCCTCCGCCCTGGTCAAGATGCGTTGGC CCAATGGCGGTCTGGAGAAATGGCGATCGCCGCCGTTCCCGGTTCCGGAAAATCCCATGCCCTAGCCGTTGCCGCTGTCC TCACCCTTGCCCGGCAATCTTTGCACCACGGCCAACAGTTGGTCATTGTGACCTTTACACGAGCCGCAGCCGAGGGGATT AAGCAAAAAATTCTGACCCACCTCAAGGCCGCCCAGTTACCTGTGGTGGGTTTTTCGGTACAAACGATCCATGGTTTAGC CTTGCAAATTGCCAGTCGCCACCCGGAGGTTTCTGGCGTGGATCTAGATAGCCTTTCTCTCCAGGATATTCCCGCAAATC ACCCCATTCTCCGCGCCGCCGTTGAGCAGTGGATTCAAGCCCATGGGGAACAATATGAACGTCTTTGTCAGGGGGCACGC TCTGATCAGGAAAAAACGGAGCAATTGCGCCGCCGTTTTGCCCTCAGCACAGAAATTTTGCCAGACCTTGCCCATACGGT GATCCATGAAAGTAAAAGTTCTAATCTCTCGCCCCAGGCCGTAGCCAAACTGGGAGAAACCCTGGACGATCCCTATCAAT CCTTGGCGATCGCCGCTGGCATTTATCAGAATTACCAACAACTGCTCCAGGAGAACAATGTCCTTGACTACGACGATCTG GTGCTAGGGGCTATCCGGGTGCTGCAACAGCCGGAGTTACAACAATATTGGCAGGGACAAATTTACGGGATTTTTGAAGA TGAGGCCCAGGATTCTAGCCCCCTCCAAGAGCAATTGATTCGCCTCCTGGCCACAGCTCCCGAATCTGGAGAATGTAACC TCGTGCGGGTGGGCGATCCAAATCAGGCGATCAATTCCACCTTTACCCCCGCTGACCCGTTCTATTTCAATCGCTTTTGT CAGGCCGTAGACTGTGCCGAAATTCACTACGCGGGCCGCTCTAGCTTGCCAATTATCACTGCGGCGAATCAGATGCTCCA CTGGGCCAGTCACACCCTTTCACCGCCGGATCGGTTTGCGTTTCGCTGGCAAGAAATTTTTCCGGTGCCCAACCATGACC CCCAACAAAATGCCAATCCTGATCCCACTGGGGCGGGGGTAGAACGCCATTACCCCCAGGATATTTACGCGACGGTGCAA CAACTTGGCGATCGCCTCGAAACTTTATTAACCGAAAATCCAGACCACAGTGCGGCGATTCTCGTGCGCAAACAACGCCA GGCCAAATTTGTCACTGAGCAATTAAGGGCGCGATTTCAGCCAACAACAATTCGCCTTTATGATGCCCGCAGCGGTAATG ATGCCAACCATCTGGTGCTAGAGCTTTATCAAATTCTGCGGTTTCTGGAGCGGCCCCACTCCCCTGACTGCCTGAAGGGT GCCCTCGATGTTTTAGGCGATCGCCAAAAAATTCCCACCCAAGATCTAGCTCGTTTAGCCACCTATCCCGAAAAATTTCT CTATCCAGGCCCCCTCGACCCGGCCCTCTCCTCTGGCCCCGCCCAGGCCACCCAAACCCTCTGTGTTCAACTGCTCCAGG CCCGCTGGCAACTGCCCCACTACCAACTACTACCCTTTTTGGCGATGACCCTGGACTATAGCGATGTCGAACTCGCCACG GTGCAAAAACTCGCCGAACGCATCGCCCAGCAAACCCAGGGCCAAAAAAATCTACGCCAGAGCCTCGAAGTGTTTGAGAT GCTCCTCCGGGATGGTTTTGAAGGCATTGAACTCGACACCGACGCCCGCTACACTCGCCCGCAGCAAATTACGGTGATCA CCATGCACAAGGCGAAGGGCTTAGATTGGGACTATGTCTTTATTCCCTTTTTGCACGACTCCGAAATCCCCGGCATGAGT TGGGTGCCTAGTGGGGCGCAATTTCTCGGCGATTACAACCTGGCGCAGGTGGCCCGGGCCCAAATTCGCCATTTTGTCCA TGGCCAAGATCAGGGGCGATCGCCAACGGCACCAGCCACCATTACGACCCTTTGGCAAGAAGCCCAGCAGCTTAAAACCG AAGAAGAATACCGACTTCTGTACGTGGCCATGACCCGCGCCAAACGACTCCTGTGGCTTTCTGCGGCCAAACAAGCTCCC TTTTCCTGGAGTACCTTTAAACCCCACCAAAGTTCATTGCAGTCCCAGAAACCCTGTCCAATTTTTGACGTTTTACAAGG AAAAATTTAA
Upstream 100 bases:
>100_bases TTTACTAATGCAAAAAATCGCCACTGATAACGAAAGCTAATTTAAAATTCCGCTATTTTGTTCGTTCCGCTACAAAACTT CCAGGCAGTAAGTGAGACCC
Downstream 100 bases:
>100_bases GGATAAAACGCTAACTGCGGTAAGCCTGCCGTTTCCTCCCAGCCCAGCATAATATTCATACATTGGACGGCTTGGCCCGA CTGACCCTTCAGGAGATTAT
Product: UvrD/REP helicase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MNHLSVHQQQFLTQLAAGLRPGQDALAQWRSGEMAIAAVPGSGKSHALAVAAVLTLARQSLHHGQQLVIVTFTRAAAEGI KQKILTHLKAAQLPVVGFSVQTIHGLALQIASRHPEVSGVDLDSLSLQDIPANHPILRAAVEQWIQAHGEQYERLCQGAR SDQEKTEQLRRRFALSTEILPDLAHTVIHESKSSNLSPQAVAKLGETLDDPYQSLAIAAGIYQNYQQLLQENNVLDYDDL VLGAIRVLQQPELQQYWQGQIYGIFEDEAQDSSPLQEQLIRLLATAPESGECNLVRVGDPNQAINSTFTPADPFYFNRFC QAVDCAEIHYAGRSSLPIITAANQMLHWASHTLSPPDRFAFRWQEIFPVPNHDPQQNANPDPTGAGVERHYPQDIYATVQ QLGDRLETLLTENPDHSAAILVRKQRQAKFVTEQLRARFQPTTIRLYDARSGNDANHLVLELYQILRFLERPHSPDCLKG ALDVLGDRQKIPTQDLARLATYPEKFLYPGPLDPALSSGPAQATQTLCVQLLQARWQLPHYQLLPFLAMTLDYSDVELAT VQKLAERIAQQTQGQKNLRQSLEVFEMLLRDGFEGIELDTDARYTRPQQITVITMHKAKGLDWDYVFIPFLHDSEIPGMS WVPSGAQFLGDYNLAQVARAQIRHFVHGQDQGRSPTAPATITTLWQEAQQLKTEEEYRLLYVAMTRAKRLLWLSAAKQAP FSWSTFKPHQSSLQSQKPCPIFDVLQGKI
Sequences:
>Translated_749_residues MNHLSVHQQQFLTQLAAGLRPGQDALAQWRSGEMAIAAVPGSGKSHALAVAAVLTLARQSLHHGQQLVIVTFTRAAAEGI KQKILTHLKAAQLPVVGFSVQTIHGLALQIASRHPEVSGVDLDSLSLQDIPANHPILRAAVEQWIQAHGEQYERLCQGAR SDQEKTEQLRRRFALSTEILPDLAHTVIHESKSSNLSPQAVAKLGETLDDPYQSLAIAAGIYQNYQQLLQENNVLDYDDL VLGAIRVLQQPELQQYWQGQIYGIFEDEAQDSSPLQEQLIRLLATAPESGECNLVRVGDPNQAINSTFTPADPFYFNRFC QAVDCAEIHYAGRSSLPIITAANQMLHWASHTLSPPDRFAFRWQEIFPVPNHDPQQNANPDPTGAGVERHYPQDIYATVQ QLGDRLETLLTENPDHSAAILVRKQRQAKFVTEQLRARFQPTTIRLYDARSGNDANHLVLELYQILRFLERPHSPDCLKG ALDVLGDRQKIPTQDLARLATYPEKFLYPGPLDPALSSGPAQATQTLCVQLLQARWQLPHYQLLPFLAMTLDYSDVELAT VQKLAERIAQQTQGQKNLRQSLEVFEMLLRDGFEGIELDTDARYTRPQQITVITMHKAKGLDWDYVFIPFLHDSEIPGMS WVPSGAQFLGDYNLAQVARAQIRHFVHGQDQGRSPTAPATITTLWQEAQQLKTEEEYRLLYVAMTRAKRLLWLSAAKQAP FSWSTFKPHQSSLQSQKPCPIFDVLQGKI >Mature_749_residues MNHLSVHQQQFLTQLAAGLRPGQDALAQWRSGEMAIAAVPGSGKSHALAVAAVLTLARQSLHHGQQLVIVTFTRAAAEGI KQKILTHLKAAQLPVVGFSVQTIHGLALQIASRHPEVSGVDLDSLSLQDIPANHPILRAAVEQWIQAHGEQYERLCQGAR SDQEKTEQLRRRFALSTEILPDLAHTVIHESKSSNLSPQAVAKLGETLDDPYQSLAIAAGIYQNYQQLLQENNVLDYDDL VLGAIRVLQQPELQQYWQGQIYGIFEDEAQDSSPLQEQLIRLLATAPESGECNLVRVGDPNQAINSTFTPADPFYFNRFC QAVDCAEIHYAGRSSLPIITAANQMLHWASHTLSPPDRFAFRWQEIFPVPNHDPQQNANPDPTGAGVERHYPQDIYATVQ QLGDRLETLLTENPDHSAAILVRKQRQAKFVTEQLRARFQPTTIRLYDARSGNDANHLVLELYQILRFLERPHSPDCLKG ALDVLGDRQKIPTQDLARLATYPEKFLYPGPLDPALSSGPAQATQTLCVQLLQARWQLPHYQLLPFLAMTLDYSDVELAT VQKLAERIAQQTQGQKNLRQSLEVFEMLLRDGFEGIELDTDARYTRPQQITVITMHKAKGLDWDYVFIPFLHDSEIPGMS WVPSGAQFLGDYNLAQVARAQIRHFVHGQDQGRSPTAPATITTLWQEAQQLKTEEEYRLLYVAMTRAKRLLWLSAAKQAP FSWSTFKPHQSSLQSQKPCPIFDVLQGKI
Specific function: DNA helicase used for plasmid rolling-circle replication and also involved in UV repair [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322369, Length=287, Percent_Identity=26.1324041811847, Blast_Score=73, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 84005; Mature: 84005
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHLSVHQQQFLTQLAAGLRPGQDALAQWRSGEMAIAAVPGSGKSHALAVAAVLTLARQS CCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH LHHGQQLVIVTFTRAAAEGIKQKILTHLKAAQLPVVGFSVQTIHGLALQIASRHPEVSGV HHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCCCCCCCC DLDSLSLQDIPANHPILRAAVEQWIQAHGEQYERLCQGARSDQEKTEQLRRRFALSTEIL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH PDLAHTVIHESKSSNLSPQAVAKLGETLDDPYQSLAIAAGIYQNYQQLLQENNVLDYDDL HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VLGAIRVLQQPELQQYWQGQIYGIFEDEAQDSSPLQEQLIRLLATAPESGECNLVRVGDP HHHHHHHHCCCCHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC NQAINSTFTPADPFYFNRFCQAVDCAEIHYAGRSSLPIITAANQMLHWASHTLSPPDRFA CHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCCCHHHH FRWQEIFPVPNHDPQQNANPDPTGAGVERHYPQDIYATVQQLGDRLETLLTENPDHSAAI HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE LVRKQRQAKFVTEQLRARFQPTTIRLYDARSGNDANHLVLELYQILRFLERPHSPDCLKG EEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH ALDVLGDRQKIPTQDLARLATYPEKFLYPGPLDPALSSGPAQATQTLCVQLLQARWQLPH HHHHHCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC YQLLPFLAMTLDYSDVELATVQKLAERIAQQTQGQKNLRQSLEVFEMLLRDGFEGIELDT HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECC DARYTRPQQITVITMHKAKGLDWDYVFIPFLHDSEIPGMSWVPSGAQFLGDYNLAQVARA CCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCCHHHHHHH QIRHFVHGQDQGRSPTAPATITTLWQEAQQLKTEEEYRLLYVAMTRAKRLLWLSAAKQAP HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC FSWSTFKPHQSSLQSQKPCPIFDVLQGKI CCCCCCCCHHHHHCCCCCCCHHHHHCCCC >Mature Secondary Structure MNHLSVHQQQFLTQLAAGLRPGQDALAQWRSGEMAIAAVPGSGKSHALAVAAVLTLARQS CCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH LHHGQQLVIVTFTRAAAEGIKQKILTHLKAAQLPVVGFSVQTIHGLALQIASRHPEVSGV HHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCCCCCCCC DLDSLSLQDIPANHPILRAAVEQWIQAHGEQYERLCQGARSDQEKTEQLRRRFALSTEIL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH PDLAHTVIHESKSSNLSPQAVAKLGETLDDPYQSLAIAAGIYQNYQQLLQENNVLDYDDL HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VLGAIRVLQQPELQQYWQGQIYGIFEDEAQDSSPLQEQLIRLLATAPESGECNLVRVGDP HHHHHHHHCCCCHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC NQAINSTFTPADPFYFNRFCQAVDCAEIHYAGRSSLPIITAANQMLHWASHTLSPPDRFA CHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCCCHHHH FRWQEIFPVPNHDPQQNANPDPTGAGVERHYPQDIYATVQQLGDRLETLLTENPDHSAAI HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE LVRKQRQAKFVTEQLRARFQPTTIRLYDARSGNDANHLVLELYQILRFLERPHSPDCLKG EEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH ALDVLGDRQKIPTQDLARLATYPEKFLYPGPLDPALSSGPAQATQTLCVQLLQARWQLPH HHHHHCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC YQLLPFLAMTLDYSDVELATVQKLAERIAQQTQGQKNLRQSLEVFEMLLRDGFEGIELDT HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECC DARYTRPQQITVITMHKAKGLDWDYVFIPFLHDSEIPGMSWVPSGAQFLGDYNLAQVARA CCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCCHHHHHHH QIRHFVHGQDQGRSPTAPATITTLWQEAQQLKTEEEYRLLYVAMTRAKRLLWLSAAKQAP HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC FSWSTFKPHQSSLQSQKPCPIFDVLQGKI CCCCCCCCHHHHHCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9701819; 9384377 [H]