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The map label for this gene is ybiA [H]

Identifier: 170078553

GI number: 170078553

Start: 2028174

End: 2028638

Strand: Direct

Name: ybiA [H]

Synonym: SYNPCC7002_A1948

Alternate gene names: 170078553

Gene position: 2028174-2028638 (Clockwise)

Preceding gene: 170078552

Following gene: 170078554

Centisome position: 67.42

GC content: 52.69

Gene sequence:

>465_bases
ATGATGGAGTCAACCGCCGAACCGATTTATTTCTACAAGGCCCATGACCCCTATGGCTGTTTCTCGAATTTTTCGCTGCA
CCCGATCCACTGCGAAGCCCTAGATTGGCCTACTGTTGAGCATTTTTACCAGGCCCATAAATTTCTCCCTACCCACCAAC
AAGATCTCATCGACAAAATTCGCGCTGCCTCGACCCCAGAAATTGCCGCCGCCCTAGGCCGCGATCCCCAGCACCCCAAA
CGCCCCGATTGGGAAGACATTAAACGAACCGTGATGTGGCAAGGGGTTTGGACAAAATTTAAAACCCACCCTGACATTGC
CCAAATTTTGCTGGCAACGGGGGACGCAGCAATTATTGAAAATTCCCCGGTGGACTATTACTGGGGCTGTGGTGCCGATG
GCAGTGGGCGTAATTATCTGGGCAAAGTGTTAATGCGAGTGCGCAGCCAACTGCGCCAGGGGTAG

Upstream 100 bases:

>100_bases
GCAAACCTTGACTCAGATCCCTACCCAGGCGATCGCCCCCAGCGCCAGACGACCAGAGGAGAATTTATAATAGCTGAGGT
TTTGCTTGCGTACAGGAGTC

Downstream 100 bases:

>100_bases
TCACGCCATAGCCTTCTCTCTCGCGAAAATGTTACCTTTTGTTTAGGACAAGCCACGTCCTACGGTCTTTAGTTTCTCGC
GCTCAGTAATGGAAAAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MMESTAEPIYFYKAHDPYGCFSNFSLHPIHCEALDWPTVEHFYQAHKFLPTHQQDLIDKIRAASTPEIAAALGRDPQHPK
RPDWEDIKRTVMWQGVWTKFKTHPDIAQILLATGDAAIIENSPVDYYWGCGADGSGRNYLGKVLMRVRSQLRQG

Sequences:

>Translated_154_residues
MMESTAEPIYFYKAHDPYGCFSNFSLHPIHCEALDWPTVEHFYQAHKFLPTHQQDLIDKIRAASTPEIAAALGRDPQHPK
RPDWEDIKRTVMWQGVWTKFKTHPDIAQILLATGDAAIIENSPVDYYWGCGADGSGRNYLGKVLMRVRSQLRQG
>Mature_154_residues
MMESTAEPIYFYKAHDPYGCFSNFSLHPIHCEALDWPTVEHFYQAHKFLPTHQQDLIDKIRAASTPEIAAALGRDPQHPK
RPDWEDIKRTVMWQGVWTKFKTHPDIAQILLATGDAAIIENSPVDYYWGCGADGSGRNYLGKVLMRVRSQLRQG

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=143, Percent_Identity=43.3566433566434, Blast_Score=130, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 17628; Mature: 17628

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMESTAEPIYFYKAHDPYGCFSNFSLHPIHCEALDWPTVEHFYQAHKFLPTHQQDLIDKI
CCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
RAASTPEIAAALGRDPQHPKRPDWEDIKRTVMWQGVWTKFKTHPDIAQILLATGDAAIIE
HCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEE
NSPVDYYWGCGADGSGRNYLGKVLMRVRSQLRQG
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMESTAEPIYFYKAHDPYGCFSNFSLHPIHCEALDWPTVEHFYQAHKFLPTHQQDLIDKI
CCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
RAASTPEIAAALGRDPQHPKRPDWEDIKRTVMWQGVWTKFKTHPDIAQILLATGDAAIIE
HCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEE
NSPVDYYWGCGADGSGRNYLGKVLMRVRSQLRQG
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]