| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078552
Identifier: 170078552
GI number: 170078552
Start: 2027487
End: 2028143
Strand: Direct
Name: 170078552
Synonym: SYNPCC7002_A1947
Alternate gene names: NA
Gene position: 2027487-2028143 (Clockwise)
Preceding gene: 170078551
Following gene: 170078553
Centisome position: 67.4
GC content: 54.64
Gene sequence:
>657_bases ATGGCTATTTCTCCTAGAAAAGTGGCGCGACCGCGAGCGCCCCGACAGCAGCAAACAACGTTTTGCCGACGGCGCTGGTT TGTTTTGGGTCTAATTGGCCTAACCTGTGGGGCGATCGCCTACCAACGTATCCAAGGCGCTTTACGTCCAGCCAAAGCCA TTTTTGTCCTTGGGGGCCACGAAGAACGGGAGCGGTTTGCGGCCCAATTTGCCCAGGAACATCCGGATCTCAAAGTTTGG GTTTCCTCCGGTAGTCCACCGGAATATGCCCGCCAGATTTTTGCGAACTATCAAATCGAAGGCGATCGCCTCCAGCTCGA TTACCAGGCCGAAGACACCGTCACCAACTTCACCAGCCTCGTAGACGAATTTAAACAAGAAAATATCGATAGCGTCTACC TCATCACTTCCGAAAACCACATGAACCGCGCCAAGCTCGTGGCCAGCATTGTTTTCGGCACCCGTGACATTGCCATTAAA CCAGTGCCTGTCCCATCGGATAATCCCCCGGAAACGACGATGAAATGTATCCGTGATGGGCTCCGCTCAATCCTCTGGGT GGTCACCGGCGAAACGGGCCGCGAGTGGCAAACCTTGACTCAGATCCCTACCCAGGCGATCGCCCCCAGCGCCAGACGAC CAGAGGAGAATTTATAA
Upstream 100 bases:
>100_bases CCCTTCCAGCGGCGGGGCTAAGATGGGGCTATGCTCCCCGTAAATTTTTCTACCCATTGCCTATAATTGGCGATGTTTCG CTTCCTCTTTTTCCCTTGGC
Downstream 100 bases:
>100_bases TAGCTGAGGTTTTGCTTGCGTACAGGAGTCATGATGGAGTCAACCGCCGAACCGATTTATTTCTACAAGGCCCATGACCC CTATGGCTGTTTCTCGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MAISPRKVARPRAPRQQQTTFCRRRWFVLGLIGLTCGAIAYQRIQGALRPAKAIFVLGGHEERERFAAQFAQEHPDLKVW VSSGSPPEYARQIFANYQIEGDRLQLDYQAEDTVTNFTSLVDEFKQENIDSVYLITSENHMNRAKLVASIVFGTRDIAIK PVPVPSDNPPETTMKCIRDGLRSILWVVTGETGREWQTLTQIPTQAIAPSARRPEENL
Sequences:
>Translated_218_residues MAISPRKVARPRAPRQQQTTFCRRRWFVLGLIGLTCGAIAYQRIQGALRPAKAIFVLGGHEERERFAAQFAQEHPDLKVW VSSGSPPEYARQIFANYQIEGDRLQLDYQAEDTVTNFTSLVDEFKQENIDSVYLITSENHMNRAKLVASIVFGTRDIAIK PVPVPSDNPPETTMKCIRDGLRSILWVVTGETGREWQTLTQIPTQAIAPSARRPEENL >Mature_217_residues AISPRKVARPRAPRQQQTTFCRRRWFVLGLIGLTCGAIAYQRIQGALRPAKAIFVLGGHEERERFAAQFAQEHPDLKVWV SSGSPPEYARQIFANYQIEGDRLQLDYQAEDTVTNFTSLVDEFKQENIDSVYLITSENHMNRAKLVASIVFGTRDIAIKP VPVPSDNPPETTMKCIRDGLRSILWVVTGETGREWQTLTQIPTQAIAPSARRPEENL
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24665; Mature: 24534
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISPRKVARPRAPRQQQTTFCRRRWFVLGLIGLTCGAIAYQRIQGALRPAKAIFVLGGH CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC EERERFAAQFAQEHPDLKVWVSSGSPPEYARQIFANYQIEGDRLQLDYQAEDTVTNFTSL HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCEECCCEEEEEECCHHHHHHHHHH VDEFKQENIDSVYLITSENHMNRAKLVASIVFGTRDIAIKPVPVPSDNPPETTMKCIRDG HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH LRSILWVVTGETGREWQTLTQIPTQAIAPSARRPEENL HHHHEEEEECCCCCHHHHHHHCCHHHCCCCCCCCCCCC >Mature Secondary Structure AISPRKVARPRAPRQQQTTFCRRRWFVLGLIGLTCGAIAYQRIQGALRPAKAIFVLGGH CCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC EERERFAAQFAQEHPDLKVWVSSGSPPEYARQIFANYQIEGDRLQLDYQAEDTVTNFTSL HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCEECCCEEEEEECCHHHHHHHHHH VDEFKQENIDSVYLITSENHMNRAKLVASIVFGTRDIAIKPVPVPSDNPPETTMKCIRDG HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH LRSILWVVTGETGREWQTLTQIPTQAIAPSARRPEENL HHHHEEEEECCCCCHHHHHHHCCHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA