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The map label for this gene is petC

Identifier: 170078514

GI number: 170078514

Start: 1995000

End: 1995542

Strand: Direct

Name: petC

Synonym: SYNPCC7002_A1909

Alternate gene names: 170078514

Gene position: 1995000-1995542 (Clockwise)

Preceding gene: 170078510

Following gene: 170078515

Centisome position: 66.32

GC content: 52.12

Gene sequence:

>543_bases
ATGACTCAATTATCAGGTTCCTCCGATGTTCCAGATCTAGGTCGTCGCCAATTTTTGAACCTCCTCTGGGTGGGGACGGC
GGCGGGAACGGCTCTCGGTGGTTTATATCCCGTTATTAAATATTTTATTCCTCCTTCTAGTGGTGGCGCTGGTGGTGGCG
TGATTGCTAAAGATGCCCTCGGTAATGACATTATCGTGAGCGACTATCTCCAAACCCACACCGCAGGCGATCGCTCCTTG
GCCCAAGGCCTCAAAGGGGATCCCACCTATGTGGTTGTCGAAGGGGATAACACCATCTCCAGCTATGGGATCAACGCCAT
CTGTACCCACCTTGGTTGTGTCGTCCCTTGGAATACCGCTGAAAATAAATTCATGTGTCCTTGCCACGGTTCTCAGTATG
ACGAAACCGGGAAAGTTGTCCGCGGCCCAGCCCCCTTATCCTTGGCCCTTGTCCATGCGGAAGTGACTGAAGATGACAAG
ATCTCCTTCACCGACTGGACAGAAACTGATTTCCGTACTGACGAAGCTCCTTGGTGGGCCTAA

Upstream 100 bases:

>100_bases
AAGCTCAGGTAAAACGCCATCTTTGCTCGCCATTTGGATGATATTCTTCATAGGAAGTATTGTAGAAACGCTTACATAAC
TATACAAAAAGGCTCTGATT

Downstream 100 bases:

>100_bases
AAACCCCATACGGGTTCATCCATTAGAGAAAACGCTTGTAAAAATTTACGATGAAAACACCTGAACTGATGGCAATCTGG
CAACGGCTAAAGACCGCCTG

Product: cytochrome b6-f complex iron-sulfur subunit

Products: NA

Alternate protein names: Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein; ISP; RISP; Rieske iron-sulfur protein

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MTQLSGSSDVPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSL
AQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDK
ISFTDWTETDFRTDEAPWWA

Sequences:

>Translated_180_residues
MTQLSGSSDVPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSL
AQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDK
ISFTDWTETDFRTDEAPWWA
>Mature_179_residues
TQLSGSSDVPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSLA
QGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKI
SFTDWTETDFRTDEAPWWA

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG0723

COG function: function code C; Rieske Fe-S protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein. Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C- terminal domain is part of the other monomer (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UCRI_SYNP2 (P26292)

Other databases:

- EMBL:   M74514
- EMBL:   CP000951
- RefSeq:   YP_001735152.1
- ProteinModelPortal:   P26292
- SMR:   P26292
- GeneID:   6057819
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1909
- HOGENOM:   HBG668715
- OMA:   YPVANYF
- ProtClustDB:   PRK13474
- HAMAP:   MF_01335
- InterPro:   IPR014909
- InterPro:   IPR017941
- InterPro:   IPR014349
- InterPro:   IPR005805
- Gene3D:   G3DSA:2.102.10.10
- PANTHER:   PTHR10134
- PRINTS:   PR00162

Pfam domain/function: PF08802 CytB6-F_Fe-S; PF00355 Rieske; SSF50022 Rieske_dom

EC number: =1.10.99.1

Molecular weight: Translated: 19179; Mature: 19047

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS51296 RIESKE; PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c37b3e0)-;

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLSGSSDVPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDAL
CCCCCCCCCCCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC
GNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTA
CCCEEEEHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCHHCHHHHHHHHCEEEECCCC
ENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA
CCCEECCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
TQLSGSSDVPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDAL
CCCCCCCCCCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC
GNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTA
CCCEEEEHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCHHCHHHHHHHHCEEEECCCC
ENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA
CCCEECCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1421151