| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078474
Identifier: 170078474
GI number: 170078474
Start: 1961946
End: 1962434
Strand: Reverse
Name: 170078474
Synonym: SYNPCC7002_A1868
Alternate gene names: NA
Gene position: 1962434-1961946 (Counterclockwise)
Preceding gene: 170078475
Following gene: 170078473
Centisome position: 65.24
GC content: 44.38
Gene sequence:
>489_bases ATGAGCGCAAATGTCCGCCGGAAACGTGCTGCGAATTGGAATGCGGGGGCGGTCGGGTGTGTTGCTATGGGCCGAACAGT GGGACGGCGATTGATTCTTTTATTCGGAGGACTTAATTTAATGGCGCTTACTCTACAGGACTTTGGGGGACAATTTTCCC CGTCAACAATCACTTTTAACATCGCGGATCTCAATGCCAAATTAGAGGCTGCTGGGTTGCCAAAGTGGGATGACCCAAGA AACGCAATTGAGCCGTTTTTTTGGATATTGTTGAGGCTTTTTTATTCAACACAGATTGATTTCTCCCAGGTGAGCGGCGT TTTATTTAATCAGCAAGATTTAGAAAATCAATCGCGAACCTTAAGAGTTAGTCGGGTTAATCTTTCGCCTACTATTTTGT CAGCCAGTTCGATTTCGGCTCGCGAGCTGTACACCTTGCAATTTAATTTTGTTGGAGCGAATGATTTAACTGATCCAGAT TTACTTTAA
Upstream 100 bases:
>100_bases TCCCGCAGTTGAGCCGTTGCAATGCCTGGAAATAACCGACCAAGGGGCGTATTAGCTGATATTTGCCCCTACAACGGAGA GCAAATAGCCTTTCAATGCG
Downstream 100 bases:
>100_bases GGGGTGTTATGGGCTGTTTGAATGTGGGCTGCTTTACGGTGTTTGTGATTTTTGTGATTATTTCACTGCTGATTTTGTCG GGGGTCATCCTTTAAATGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MSANVRRKRAANWNAGAVGCVAMGRTVGRRLILLFGGLNLMALTLQDFGGQFSPSTITFNIADLNAKLEAAGLPKWDDPR NAIEPFFWILLRLFYSTQIDFSQVSGVLFNQQDLENQSRTLRVSRVNLSPTILSASSISARELYTLQFNFVGANDLTDPD LL
Sequences:
>Translated_162_residues MSANVRRKRAANWNAGAVGCVAMGRTVGRRLILLFGGLNLMALTLQDFGGQFSPSTITFNIADLNAKLEAAGLPKWDDPR NAIEPFFWILLRLFYSTQIDFSQVSGVLFNQQDLENQSRTLRVSRVNLSPTILSASSISARELYTLQFNFVGANDLTDPD LL >Mature_161_residues SANVRRKRAANWNAGAVGCVAMGRTVGRRLILLFGGLNLMALTLQDFGGQFSPSTITFNIADLNAKLEAAGLPKWDDPRN AIEPFFWILLRLFYSTQIDFSQVSGVLFNQQDLENQSRTLRVSRVNLSPTILSASSISARELYTLQFNFVGANDLTDPDL L
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17943; Mature: 17812
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANVRRKRAANWNAGAVGCVAMGRTVGRRLILLFGGLNLMALTLQDFGGQFSPSTITFN CCCCCCCHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCHHEEEEEHHCCCCCCCCEEEEE IADLNAKLEAAGLPKWDDPRNAIEPFFWILLRLFYSTQIDFSQVSGVLFNQQDLENQSRT EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCEEECHHHCCCCCCE LRVSRVNLSPTILSASSISARELYTLQFNFVGANDLTDPDLL EEEEEECCCCEEEECCCCCCEEEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure SANVRRKRAANWNAGAVGCVAMGRTVGRRLILLFGGLNLMALTLQDFGGQFSPSTITFN CCCCCCHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCHHEEEEEHHCCCCCCCCEEEEE IADLNAKLEAAGLPKWDDPRNAIEPFFWILLRLFYSTQIDFSQVSGVLFNQQDLENQSRT EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCEEECHHHCCCCCCE LRVSRVNLSPTILSASSISARELYTLQFNFVGANDLTDPDLL EEEEEECCCCEEEECCCCCCEEEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA