| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078475
Identifier: 170078475
GI number: 170078475
Start: 1962480
End: 1963118
Strand: Reverse
Name: 170078475
Synonym: SYNPCC7002_A1869
Alternate gene names: NA
Gene position: 1963118-1962480 (Counterclockwise)
Preceding gene: 170078484
Following gene: 170078474
Centisome position: 65.26
GC content: 45.23
Gene sequence:
>639_bases ATGGCGACTTGTGATTGTAGCGGCGCAAGTCGCGCTTATGTGATTGTTAACCCGAACAGCGTTAACCGCCGGGAAATCTT AAGCCTTAATCCCCCCATCTGCCACGACGTAAAAACCAAGGGGCTGCTAATCAATGGATCGCCCTGGACTGCCCCAAAAG AGATCCAATCATGGGAGACAGAGCAGTTACCTACAGGCCCTTTATTAGTAGCAAATGGGATGTTTTCTTACAATGCAGCT TTACAACAACCTATTTGTTTACAGTCCACAAATGCACCAGACATCAATGTTTTTCACCCTAGCCTTTTCTCTCAATCTGG AATTAGCAACACAACAGGGTTACAGACTCTAAGCGAGGGATTTTCTCTAGAAAATACTCGTGGAGGGGCTGCAAGCGGCC ATAGTGGAACGGTGAATTGTAGAAAATTCCATAAACACAATTGCAACTGGGGAGAAATAAGTTTTAATGGCGGCCCCTTT AGGCAATTAGGGTCTGGGCGTCTCTATTATTCTTCCCCAGGTAATTGCATTCTAACTATCACCTACACAGACAACACAAC ACAAGAATTAATTTATGATGAATGTCCCGCAGTTGAGCCGTTGCAATGCCTGGAAATAACCGACCAAGGGGCGTATTAG
Upstream 100 bases:
>100_bases TATCGCCTTGCTGAGGAAATGGATTGGACGATTGATCGGGTTTATAACCAACTATTGAAAGAACGCTCTATCCTGCTGCG GATGAACCGGGAGGTAAATA
Downstream 100 bases:
>100_bases CTGATATTTGCCCCTACAACGGAGAGCAAATAGCCTTTCAATGCGATGAGCGCAAATGTCCGCCGGAAACGTGCTGCGAA TTGGAATGCGGGGGCGGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MATCDCSGASRAYVIVNPNSVNRREILSLNPPICHDVKTKGLLINGSPWTAPKEIQSWETEQLPTGPLLVANGMFSYNAA LQQPICLQSTNAPDINVFHPSLFSQSGISNTTGLQTLSEGFSLENTRGGAASGHSGTVNCRKFHKHNCNWGEISFNGGPF RQLGSGRLYYSSPGNCILTITYTDNTTQELIYDECPAVEPLQCLEITDQGAY
Sequences:
>Translated_212_residues MATCDCSGASRAYVIVNPNSVNRREILSLNPPICHDVKTKGLLINGSPWTAPKEIQSWETEQLPTGPLLVANGMFSYNAA LQQPICLQSTNAPDINVFHPSLFSQSGISNTTGLQTLSEGFSLENTRGGAASGHSGTVNCRKFHKHNCNWGEISFNGGPF RQLGSGRLYYSSPGNCILTITYTDNTTQELIYDECPAVEPLQCLEITDQGAY >Mature_211_residues ATCDCSGASRAYVIVNPNSVNRREILSLNPPICHDVKTKGLLINGSPWTAPKEIQSWETEQLPTGPLLVANGMFSYNAAL QQPICLQSTNAPDINVFHPSLFSQSGISNTTGLQTLSEGFSLENTRGGAASGHSGTVNCRKFHKHNCNWGEISFNGGPFR QLGSGRLYYSSPGNCILTITYTDNTTQELIYDECPAVEPLQCLEITDQGAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22991; Mature: 22860
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATCDCSGASRAYVIVNPNSVNRREILSLNPPICHDVKTKGLLINGSPWTAPKEIQSWET CCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCC EQLPTGPLLVANGMFSYNAALQQPICLQSTNAPDINVFHPSLFSQSGISNTTGLQTLSEG CCCCCCCEEEECCCEEECHHHCCCEEEECCCCCCEEEECCHHHCCCCCCCCHHHHHHHHC FSLENTRGGAASGHSGTVNCRKFHKHNCNWGEISFNGGPFRQLGSGRLYYSSPGNCILTI CCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCEEEECCCCHHHHCCCEEEEECCCCEEEEE TYTDNTTQELIYDECPAVEPLQCLEITDQGAY EECCCCHHHHHHHCCCCCCCEEEEEEECCCCC >Mature Secondary Structure ATCDCSGASRAYVIVNPNSVNRREILSLNPPICHDVKTKGLLINGSPWTAPKEIQSWET CCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCC EQLPTGPLLVANGMFSYNAALQQPICLQSTNAPDINVFHPSLFSQSGISNTTGLQTLSEG CCCCCCCEEEECCCEEECHHHCCCEEEECCCCCCEEEECCHHHCCCCCCCCHHHHHHHHC FSLENTRGGAASGHSGTVNCRKFHKHNCNWGEISFNGGPFRQLGSGRLYYSSPGNCILTI CCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCEEEECCCCHHHHCCCEEEEECCCCEEEEE TYTDNTTQELIYDECPAVEPLQCLEITDQGAY EECCCCHHHHHHHCCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA