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The map label for this gene is yciR [C]

Identifier: 170078465

GI number: 170078465

Start: 1947253

End: 1948965

Strand: Reverse

Name: yciR [C]

Synonym: SYNPCC7002_A1859

Alternate gene names: 170078465

Gene position: 1948965-1947253 (Counterclockwise)

Preceding gene: 170078466

Following gene: 170078463

Centisome position: 64.79

GC content: 35.55

Gene sequence:

>1713_bases
ATGAAAAATCAATACAAAATGAAACAAGAAAAGCACCAACTTAATTGGTATGCCAATATTTCTAGGCTCAGTCGTCCTAA
GAGCTATTTGGGCAAGATAATGTTAGTGGCGTTTCTAGGAACCCATATACCATTATTGACTTTGTTCTTTTATTCCATTA
GCGTTACCACCCTAAGTACAGATACAAAAATTCGCGTTTTAGTAGTCGCACTCCTCGCTACATTAATTGGAACAGCCGTT
ACTCTTTTTACGTTACAAAAACTATTATTGCCGATCAGTGTTACAGCAAAAGGCTTAAGGAAATATTTAGAAAACAATCA
AATCCCAAAGCTGCCAACACATTTTCAAGACGAAGTAGGCGTTTTAATGGCCGATACCCTATACACGATTTCTAAATTAG
ATGAATTAATCGAACAATTAAAAAACTACGATCACACCACATCCTTGCCGAATCTCCATTTATTTCAAGCACTACTACAA
AAAGAAATTTACAACGCTCAATGTCGCAATCAATCCTTGGCCGTATTGTTTCTAGATCTAGACAATTTCACAAACATCAA
TACTCATTTAGGCAGAGATTATGGGAATTTAATTTTAAGAACAATTGCTCAACAATTAACTCAAGCAATTGGTGATAATG
ACTTATTGGCGAAAATAAATACCGATACATTTGCGATTATTTACCCCCATTTAATATCTTTAGAGGATTTAGAAAAATAC
TCTCAAAAACTCTTAACTATCATCAATCAAAAAGTGACGGTCAAACATGAAGATATTTATCTGAGTGCGACTATGGGGAT
CACTGTTTATGATGAAGGCAAGGTAGAGCCCCAAGAAATCATCAATCAAGCAGAAACCGCCCTCAATTTAGCCAAGGAAG
AAGGGCGGAATATTTATCGCTTTTATTCGGTAGAAACCAATGAAAAATTACGCAGCCGTTTTCAGTTAGAGAGAGATTTA
TATCGTGCCTTAGAGAGAGAAGAGTTAGAACTTTTTTACCAACCACAAATTGATGTCAAAACAGGAAACATTACTGGTGC
TGAAGCTTTATTGCGATGGCGTCATCATGAACATGGGTTTATATCCCCTGGTATATTCATCCCCATTGCAGAAGCAAGTG
ATTTAATTATTAACATCAGTGATTGGGTTCTTAAAACTGCTTGTTACCAAAATCAACAATGGACTAAAGATGGTTTTCCT
GAACTTTGCGTGGCTGTTAATTTATCAGGAAAACAGTTCCAACAGCCTCAGTTAGTGGATGATGTTTCCAAGATCTTAAA
AGAAACCTCTCTTAAACCAAGTCAATTAGAATTAGAAATTACAGAAGGATTACTGATTAACAATATACAAAACGCAGTAA
AGACTTTAGAGGATTTACACAATTTGGGTTTGATTACTGCTTTGGATGATTTTGGGACTGGCTTTTCTTCTTTGAGCTAT
CTGAAGCGTTTTTCTTTAGATTATTTAAAAATAGATCAATCTTTTGTTCGTGGTATTCCCCTAGACAAAGACGATGTTGC
AATTACCAACTCTATCATTGCCCTTGCCCATAGCTTACAGATAGAAGTCATCGCAGAGGGAGTAGAAACTATTGAGCAAG
TTAATTATCTCAAAAGTGTTGGTTGTAATAAGTTACAAGGTTATTACTATAGTCGTCCTATTTGCGCTAAAGACTTTGCT
GAACTTTGGGAACAAAATCTAGAAAAAGGTTAG

Upstream 100 bases:

>100_bases
ACAAATATTTAATTCATGCAAAATAAATACATATTCTTGTTAAAATAATTAAATGCTATTATTACTTCAATGGTTGCAGA
CAAAAGAAAGCTTTTTGGGC

Downstream 100 bases:

>100_bases
TTCACCACAAATAGAACGACATAATGTCCTAGATCACGCTCTAAAATTGAATATCAGTGAAGGTAAACACTTTTTTATCA
ACTTCTTGATCGTTTTCTAG

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MKNQYKMKQEKHQLNWYANISRLSRPKSYLGKIMLVAFLGTHIPLLTLFFYSISVTTLSTDTKIRVLVVALLATLIGTAV
TLFTLQKLLLPISVTAKGLRKYLENNQIPKLPTHFQDEVGVLMADTLYTISKLDELIEQLKNYDHTTSLPNLHLFQALLQ
KEIYNAQCRNQSLAVLFLDLDNFTNINTHLGRDYGNLILRTIAQQLTQAIGDNDLLAKINTDTFAIIYPHLISLEDLEKY
SQKLLTIINQKVTVKHEDIYLSATMGITVYDEGKVEPQEIINQAETALNLAKEEGRNIYRFYSVETNEKLRSRFQLERDL
YRALEREELELFYQPQIDVKTGNITGAEALLRWRHHEHGFISPGIFIPIAEASDLIINISDWVLKTACYQNQQWTKDGFP
ELCVAVNLSGKQFQQPQLVDDVSKILKETSLKPSQLELEITEGLLINNIQNAVKTLEDLHNLGLITALDDFGTGFSSLSY
LKRFSLDYLKIDQSFVRGIPLDKDDVAITNSIIALAHSLQIEVIAEGVETIEQVNYLKSVGCNKLQGYYYSRPICAKDFA
ELWEQNLEKG

Sequences:

>Translated_570_residues
MKNQYKMKQEKHQLNWYANISRLSRPKSYLGKIMLVAFLGTHIPLLTLFFYSISVTTLSTDTKIRVLVVALLATLIGTAV
TLFTLQKLLLPISVTAKGLRKYLENNQIPKLPTHFQDEVGVLMADTLYTISKLDELIEQLKNYDHTTSLPNLHLFQALLQ
KEIYNAQCRNQSLAVLFLDLDNFTNINTHLGRDYGNLILRTIAQQLTQAIGDNDLLAKINTDTFAIIYPHLISLEDLEKY
SQKLLTIINQKVTVKHEDIYLSATMGITVYDEGKVEPQEIINQAETALNLAKEEGRNIYRFYSVETNEKLRSRFQLERDL
YRALEREELELFYQPQIDVKTGNITGAEALLRWRHHEHGFISPGIFIPIAEASDLIINISDWVLKTACYQNQQWTKDGFP
ELCVAVNLSGKQFQQPQLVDDVSKILKETSLKPSQLELEITEGLLINNIQNAVKTLEDLHNLGLITALDDFGTGFSSLSY
LKRFSLDYLKIDQSFVRGIPLDKDDVAITNSIIALAHSLQIEVIAEGVETIEQVNYLKSVGCNKLQGYYYSRPICAKDFA
ELWEQNLEKG
>Mature_570_residues
MKNQYKMKQEKHQLNWYANISRLSRPKSYLGKIMLVAFLGTHIPLLTLFFYSISVTTLSTDTKIRVLVVALLATLIGTAV
TLFTLQKLLLPISVTAKGLRKYLENNQIPKLPTHFQDEVGVLMADTLYTISKLDELIEQLKNYDHTTSLPNLHLFQALLQ
KEIYNAQCRNQSLAVLFLDLDNFTNINTHLGRDYGNLILRTIAQQLTQAIGDNDLLAKINTDTFAIIYPHLISLEDLEKY
SQKLLTIINQKVTVKHEDIYLSATMGITVYDEGKVEPQEIINQAETALNLAKEEGRNIYRFYSVETNEKLRSRFQLERDL
YRALEREELELFYQPQIDVKTGNITGAEALLRWRHHEHGFISPGIFIPIAEASDLIINISDWVLKTACYQNQQWTKDGFP
ELCVAVNLSGKQFQQPQLVDDVSKILKETSLKPSQLELEITEGLLINNIQNAVKTLEDLHNLGLITALDDFGTGFSSLSY
LKRFSLDYLKIDQSFVRGIPLDKDDVAITNSIIALAHSLQIEVIAEGVETIEQVNYLKSVGCNKLQGYYYSRPICAKDFA
ELWEQNLEKG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=477, Percent_Identity=31.8658280922432, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI87081921, Length=426, Percent_Identity=31.4553990610329, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI226510982, Length=535, Percent_Identity=28.411214953271, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=36.144578313253, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=36.0323886639676, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=36.8, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=34.5381526104418, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=33.6065573770492, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787055, Length=396, Percent_Identity=28.5353535353535, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=31.8548387096774, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=266, Percent_Identity=31.9548872180451, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=24.7641509433962, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787410, Length=138, Percent_Identity=31.8840579710145, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788381, Length=435, Percent_Identity=20.4597701149425, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=28.3236994219653, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64968; Mature: 64968

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQYKMKQEKHQLNWYANISRLSRPKSYLGKIMLVAFLGTHIPLLTLFFYSISVTTLST
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
DTKIRVLVVALLATLIGTAVTLFTLQKLLLPISVTAKGLRKYLENNQIPKLPTHFQDEVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
VLMADTLYTISKLDELIEQLKNYDHTTSLPNLHLFQALLQKEIYNAQCRNQSLAVLFLDL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DNFTNINTHLGRDYGNLILRTIAQQLTQAIGDNDLLAKINTDTFAIIYPHLISLEDLEKY
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEHHHHCCHHHHHHH
SQKLLTIINQKVTVKHEDIYLSATMGITVYDEGKVEPQEIINQAETALNLAKEEGRNIYR
HHHHHHHHCCCEEEEECCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEE
FYSVETNEKLRSRFQLERDLYRALEREELELFYQPQIDVKTGNITGAEALLRWRHHEHGF
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCHHHHHHHHHHCCCCC
ISPGIFIPIAEASDLIINISDWVLKTACYQNQQWTKDGFPELCVAVNLSGKQFQQPQLVD
CCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH
DVSKILKETSLKPSQLELEITEGLLINNIQNAVKTLEDLHNLGLITALDDFGTGFSSLSY
HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHCCCHHHHHH
LKRFSLDYLKIDQSFVRGIPLDKDDVAITNSIIALAHSLQIEVIAEGVETIEQVNYLKSV
HHHHCCHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCNKLQGYYYSRPICAKDFAELWEQNLEKG
CCCHHCCEECCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNQYKMKQEKHQLNWYANISRLSRPKSYLGKIMLVAFLGTHIPLLTLFFYSISVTTLST
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
DTKIRVLVVALLATLIGTAVTLFTLQKLLLPISVTAKGLRKYLENNQIPKLPTHFQDEVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
VLMADTLYTISKLDELIEQLKNYDHTTSLPNLHLFQALLQKEIYNAQCRNQSLAVLFLDL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DNFTNINTHLGRDYGNLILRTIAQQLTQAIGDNDLLAKINTDTFAIIYPHLISLEDLEKY
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEHHHHCCHHHHHHH
SQKLLTIINQKVTVKHEDIYLSATMGITVYDEGKVEPQEIINQAETALNLAKEEGRNIYR
HHHHHHHHCCCEEEEECCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEE
FYSVETNEKLRSRFQLERDLYRALEREELELFYQPQIDVKTGNITGAEALLRWRHHEHGF
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCHHHHHHHHHHCCCCC
ISPGIFIPIAEASDLIINISDWVLKTACYQNQQWTKDGFPELCVAVNLSGKQFQQPQLVD
CCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH
DVSKILKETSLKPSQLELEITEGLLINNIQNAVKTLEDLHNLGLITALDDFGTGFSSLSY
HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHCCCHHHHHH
LKRFSLDYLKIDQSFVRGIPLDKDDVAITNSIIALAHSLQIEVIAEGVETIEQVNYLKSV
HHHHCCHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCNKLQGYYYSRPICAKDFAELWEQNLEKG
CCCHHCCEECCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]