| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078463
Identifier: 170078463
GI number: 170078463
Start: 1945489
End: 1946334
Strand: Reverse
Name: 170078463
Synonym: SYNPCC7002_A1857
Alternate gene names: NA
Gene position: 1946334-1945489 (Counterclockwise)
Preceding gene: 170078465
Following gene: 170078461
Centisome position: 64.7
GC content: 46.93
Gene sequence:
>846_bases ATGAGTCCTGTACTGCAATTGGCGATCGCCACCCTGATTTTGGGGACCTCCGGCGTCTTTATCAAACTGGCCGCTTTGTC TCCCCTCGTGATGACCTTTTTTCGGGCGGGCATTCCCCTAATCTTCGTCTCAGGTTTATTCCTTTACCGTCGGGAACCTC TTTTTTGGGGCGCAACTCCTTTTTTGTTGCTCATTTCCTTTCTCGATGCCGTGCGGGGATTATGCTACATCATTGGCTTT AGCTATGCCGACCTCAGCAGTGCCGTCGTGATCCTCTACACCTGGCCCCTATTTACGACCCTATTGAGTTGGATTTTTCT CAAAGAAACAATTCCCCACCGTAACCTGTGGCTATTACCCTGCTTCATTTTGGGGATCATCGTTATCTACGCTGATGCGG AAATTAGTCTATCGAGCCGGAGCTTCTTGGGTCTTACCAGCGTTCTCATTGCCGCCGTTTTGGTGGCGTCTACTGTGGTG ATGTACAAAGTTAAAGCCGCTGATTTTTCGGTATATCGGCTGATTTTTTACCAAAACCTTGTTGCTGGCGTCGTTTCCTT TCCTTTTCTGCTAGGAACTCAACCTTGGCCCAACCTATTTCAGTTCACCATGGGAGGGATTTACGGTATTTCCATCGGGA TTATTGGTTTTATGCTGTTTTTTTCTGCCCTTAGTAAACTCAAAGCTTCGACCACAGCCCTCCTCTGTTATCTCGAAATT TTAAGCACTATTGTCTGTGGCATCGTCTTTTTCCAAGAAGAGCTTTCCGTAAATATTATTCTGGGCGCTTCCCTAATTTT AGGAGGGAGTTTCTGTTTGAAAAAAACCGGCGATGTTGCCCCCTAG
Upstream 100 bases:
>100_bases GTTTTTGATCTTGTCAGGGGCTAGCGCTAGGAGTTGTTGGGGGTTACCTTACATAGGTCGGTCTCTGTGGCCTGTTTTCT ACACTGTCTAAAAACCTTTG
Downstream 100 bases:
>100_bases GTCAGGACGTCAGCCCCCAACAATTTTTGGTATTTGCGCTGGAGTTCCTGTTGCATCAGGGGATATTGCTCTAGGAGAGG ATCAATTTTGAGCAATTGTT
Product: integral membrane domain-containing protein
Products: NA
Alternate protein names: Integral Membrane Domain-Containing Protein; Permease Drug/Metabolite Transporter Superfamily; EamA Family Protein; DMT Family Permease
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MSPVLQLAIATLILGTSGVFIKLAALSPLVMTFFRAGIPLIFVSGLFLYRREPLFWGATPFLLLISFLDAVRGLCYIIGF SYADLSSAVVILYTWPLFTTLLSWIFLKETIPHRNLWLLPCFILGIIVIYADAEISLSSRSFLGLTSVLIAAVLVASTVV MYKVKAADFSVYRLIFYQNLVAGVVSFPFLLGTQPWPNLFQFTMGGIYGISIGIIGFMLFFSALSKLKASTTALLCYLEI LSTIVCGIVFFQEELSVNIILGASLILGGSFCLKKTGDVAP
Sequences:
>Translated_281_residues MSPVLQLAIATLILGTSGVFIKLAALSPLVMTFFRAGIPLIFVSGLFLYRREPLFWGATPFLLLISFLDAVRGLCYIIGF SYADLSSAVVILYTWPLFTTLLSWIFLKETIPHRNLWLLPCFILGIIVIYADAEISLSSRSFLGLTSVLIAAVLVASTVV MYKVKAADFSVYRLIFYQNLVAGVVSFPFLLGTQPWPNLFQFTMGGIYGISIGIIGFMLFFSALSKLKASTTALLCYLEI LSTIVCGIVFFQEELSVNIILGASLILGGSFCLKKTGDVAP >Mature_280_residues SPVLQLAIATLILGTSGVFIKLAALSPLVMTFFRAGIPLIFVSGLFLYRREPLFWGATPFLLLISFLDAVRGLCYIIGFS YADLSSAVVILYTWPLFTTLLSWIFLKETIPHRNLWLLPCFILGIIVIYADAEISLSSRSFLGLTSVLIAAVLVASTVVM YKVKAADFSVYRLIFYQNLVAGVVSFPFLLGTQPWPNLFQFTMGGIYGISIGIIGFMLFFSALSKLKASTTALLCYLEIL STIVCGIVFFQEELSVNIILGASLILGGSFCLKKTGDVAP
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30751; Mature: 30620
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVLQLAIATLILGTSGVFIKLAALSPLVMTFFRAGIPLIFVSGLFLYRREPLFWGATP CCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH FLLLISFLDAVRGLCYIIGFSYADLSSAVVILYTWPLFTTLLSWIFLKETIPHRNLWLLP HHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHH CFILGIIVIYADAEISLSSRSFLGLTSVLIAAVLVASTVVMYKVKAADFSVYRLIFYQNL HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHH VAGVVSFPFLLGTQPWPNLFQFTMGGIYGISIGIIGFMLFFSALSKLKASTTALLCYLEI HHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSTIVCGIVFFQEELSVNIILGASLILGGSFCLKKTGDVAP HHHHHHHHHHHHHHCCEEEEEEHHHHHCCHHHHCCCCCCCC >Mature Secondary Structure SPVLQLAIATLILGTSGVFIKLAALSPLVMTFFRAGIPLIFVSGLFLYRREPLFWGATP CHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH FLLLISFLDAVRGLCYIIGFSYADLSSAVVILYTWPLFTTLLSWIFLKETIPHRNLWLLP HHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHH CFILGIIVIYADAEISLSSRSFLGLTSVLIAAVLVASTVVMYKVKAADFSVYRLIFYQNL HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHH VAGVVSFPFLLGTQPWPNLFQFTMGGIYGISIGIIGFMLFFSALSKLKASTTALLCYLEI HHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSTIVCGIVFFQEELSVNIILGASLILGGSFCLKKTGDVAP HHHHHHHHHHHHHHCCEEEEEEHHHHHCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA