| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078426
Identifier: 170078426
GI number: 170078426
Start: 1907330
End: 1907812
Strand: Direct
Name: 170078426
Synonym: SYNPCC7002_A1820
Alternate gene names: NA
Gene position: 1907330-1907812 (Clockwise)
Preceding gene: 170078425
Following gene: 170078428
Centisome position: 63.41
GC content: 54.24
Gene sequence:
>483_bases ATGGCGCAAAATTTACCCGCTCCCCCCCAACCTTTGCCCGATAAACTTTGGGGTGAAAATTGGCGTTTTGGCAGTATCCC TGCTGGAGATTTTTGGGATTTGTTTGGCGATCGCCCGATCCCGATTTTGTCGCTGCCGGAGGAGTTGCAGCCGGTGAAAT TAGGGCTAGCTTCTAATGTGCTGATTCCGGGGACGATTATTTATGGTGGCAGGCAGTCGATGCAGTTGGCCCAGTGGCTC CAAGAACAGCAACCCCAAACGGTTTTTTACCAGGAAACGGAGGCCAACCTCGCGGGCGGATTTGTCCTTACCGGGGCCGA TACCCAACGGTGGGTGATCATGACTTTCCATGACCAGGCGATCGCCAGCGCCGGACAACGTTACCAACAACGGCTCCAGC AAGCCCAAGGTTTACATTTCCTTTTAGTGCAACCCGACGATTCCGATGTGACCCACACGGCCCTTTGGCTCCTGAAAGCT TAG
Upstream 100 bases:
>100_bases GACCCCCAGGTGAAACTCAGTGAGGGCCTGCAGCGAGAATGGGACTGGATTCAAAGTCTGTATTAGTTTGTATGAAAACA ATCCCTGAGGCGAATTGATT
Downstream 100 bases:
>100_bases TCGTTGACGCAAATTAGCCCAGATGAATTAGTCCAAATCAAAATCCCAATAAAAAGCGATCGCCACCTGAGAGGAATAGG AGAAGGGCGATCGCCGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MAQNLPAPPQPLPDKLWGENWRFGSIPAGDFWDLFGDRPIPILSLPEELQPVKLGLASNVLIPGTIIYGGRQSMQLAQWL QEQQPQTVFYQETEANLAGGFVLTGADTQRWVIMTFHDQAIASAGQRYQQRLQQAQGLHFLLVQPDDSDVTHTALWLLKA
Sequences:
>Translated_160_residues MAQNLPAPPQPLPDKLWGENWRFGSIPAGDFWDLFGDRPIPILSLPEELQPVKLGLASNVLIPGTIIYGGRQSMQLAQWL QEQQPQTVFYQETEANLAGGFVLTGADTQRWVIMTFHDQAIASAGQRYQQRLQQAQGLHFLLVQPDDSDVTHTALWLLKA >Mature_159_residues AQNLPAPPQPLPDKLWGENWRFGSIPAGDFWDLFGDRPIPILSLPEELQPVKLGLASNVLIPGTIIYGGRQSMQLAQWLQ EQQPQTVFYQETEANLAGGFVLTGADTQRWVIMTFHDQAIASAGQRYQQRLQQAQGLHFLLVQPDDSDVTHTALWLLKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17918; Mature: 17786
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQNLPAPPQPLPDKLWGENWRFGSIPAGDFWDLFGDRPIPILSLPEELQPVKLGLASNV CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEECCCCCE LIPGTIIYGGRQSMQLAQWLQEQQPQTVFYQETEANLAGGFVLTGADTQRWVIMTFHDQA ECCCEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEECCHH IASAGQRYQQRLQQAQGLHFLLVQPDDSDVTHTALWLLKA HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECC >Mature Secondary Structure AQNLPAPPQPLPDKLWGENWRFGSIPAGDFWDLFGDRPIPILSLPEELQPVKLGLASNV CCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEECCCCCE LIPGTIIYGGRQSMQLAQWLQEQQPQTVFYQETEANLAGGFVLTGADTQRWVIMTFHDQA ECCCEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEECCHH IASAGQRYQQRLQQAQGLHFLLVQPDDSDVTHTALWLLKA HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA