Click here to switch to the map view.

The map label for this gene is cas

Identifier: 170078384

GI number: 170078384

Start: 1862467

End: 1864125

Strand: Direct

Name: cas

Synonym: SYNPCC7002_A1777

Alternate gene names: NA

Gene position: 1862467-1864125 (Clockwise)

Preceding gene: 170078383

Following gene: 170078385

Centisome position: 61.92

GC content: 49.97

Gene sequence:

>1659_bases
ATGTTTGCTCCGGTTATTCCCGAAACACAACCAACAATTAAAGTATCAGGTCTTCATGCGATCGCCTATTGTCCGCGACT
GTTCTATCTTGAGGAAGTAGAAGGACTCTATACACAGGATGCAGCAGTATTTGCAGGGCGGCGACTCCATGTGGATCTCG
AACAAGAGGAGGAGGGAGAATGGGAAGATCTTTATCTCGAAAGTGAAGATTTAGGCATTCGGGGTCGGGTGGATGCCCTC
CGCACTCGTAATGGTCTAACGATTCCCTATGAGCACAAGCGAGGGAAGGCGGCACGGGATGATCAGAAAAATCCTTTGCC
TTGGGAGAGCGATCACCTGCAGATTATTTCCTACTGCTATCTGTTAGAAGTCTCCCTAGGGATTTCTATTTCCGAGGGTC
GGATTCGTTACCATGCGGATAATGTCCTCATCCATGTGCCCTTTGATGAAACGGCAAAAGCAGAGGTCAGAGAGGCGATC
GCCAATGCTAGAAAACTTTTAGACTCTGATTTTCGTCCCCCTGTCACGGAAAACGAACGACTTTGTGCCCGTTGTTCCCT
TGCGCCCGTTTGTTTACCAGAGGAAGCACGCCTTGCCCATGACCGAGAATGGCAACCGATCCGCTTATTTCCCAAGGACG
ACGATCGCCAAATTCTTCATACTCTTGAACCGGGCACGAGGGTCGGGCGCACCGGAGAACAAATTAAAATTACCCGACGA
GATCAACCCATCGAAAAGATTGCCGTCCAGCAAGTCTCCCAAGTCGTTCTCCATGGTTTTTCGCAAATTTCGACCCAAGC
CCTCCATTTCCTTGCCAGTCACAATGTCGGCATTCACTGGATTTCGGGTGGCGATCGCTACATCGGTAGTTTCGATAATC
GTCAGGGCAGTATCCAGCGGCGGATTCAGCAATATCGCGCCCTCAGCCAAACGGATTTTTGTGTGGATCTCGCCAAAAAA
CTGGTGTGGTGTCGCGGTCAAGGGCAACGAAAATTTCTCATGCGGGGAAAACGAAGTAACAAAGCCAGTTCACCCAAATT
GAATGAGGCGATCTCCCAAATGAAACGGGTATTGAAACAGGTGGAAAATGCGGAGAATCTGGCTACTCTCCTCGGCATTG
AAGGGAATTTGGCGGCACTCTATTTTGGCGCATTACCCTGTACCCTCACCGCAACTGTCCCTAATGAACTACGGTTTTCT
GGTCGCAATCGTCGTCCACCCAAAGATCGCTTTAATGCCCTCCTCAGTTTTGGCTATAGTCTCCTACTAAAAGATGTGAT
GAACAGCATTATCGCCGTTGGTCTAGAGCCTGCCCTCGGTTTCTATCACCAACCCCGCACCCAAGCCTCCCCCCTCGCCC
TTGATCTGATGGAGATTTTTCGAGTTCCCCTCGTCGATATGGTCGTCATCGCCTCGATCAACCGTTCTCAATGGGATATT
ACCGAGGATTTTTCAATTCGGGGTCAGCAGGTTTGGCTCTCTGATTCGGGTCGCAAAAAGTTTATCGAGTGCTATGAACG
CCGTAAAGCTGAGTTATGGAAACATCCCATGCTTGGTTATTCCCTCAGTTATGCCCGCCTCATTGAGCTAGAGGTGCGGC
TCCTCGAAAAAGAATGGTCTGGGGAAGCGGGTCTATTCGGTCAACTGATTGTGAGGTGA

Upstream 100 bases:

>100_bases
CAATCAAGTGTGATAACTAACGTGTTTTTTTTAAGTAGGAAAGATTATTGCCGGGGTGATTTTTCAAAATACATTTAATA
ACTTTTTTGAGGTTCATTAA

Downstream 100 bases:

>100_bases
TCATGGCAGAACTCAAACATTGGTATTTAGTTTGTTATGACATCCGCTCCCAAAAGCGTTGGCGTAAAGCTTATAAGCTC
CTCGAAGGCTATGGGGAACG

Product: putative CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MFAPVIPETQPTIKVSGLHAIAYCPRLFYLEEVEGLYTQDAAVFAGRRLHVDLEQEEEGEWEDLYLESEDLGIRGRVDAL
RTRNGLTIPYEHKRGKAARDDQKNPLPWESDHLQIISYCYLLEVSLGISISEGRIRYHADNVLIHVPFDETAKAEVREAI
ANARKLLDSDFRPPVTENERLCARCSLAPVCLPEEARLAHDREWQPIRLFPKDDDRQILHTLEPGTRVGRTGEQIKITRR
DQPIEKIAVQQVSQVVLHGFSQISTQALHFLASHNVGIHWISGGDRYIGSFDNRQGSIQRRIQQYRALSQTDFCVDLAKK
LVWCRGQGQRKFLMRGKRSNKASSPKLNEAISQMKRVLKQVENAENLATLLGIEGNLAALYFGALPCTLTATVPNELRFS
GRNRRPPKDRFNALLSFGYSLLLKDVMNSIIAVGLEPALGFYHQPRTQASPLALDLMEIFRVPLVDMVVIASINRSQWDI
TEDFSIRGQQVWLSDSGRKKFIECYERRKAELWKHPMLGYSLSYARLIELEVRLLEKEWSGEAGLFGQLIVR

Sequences:

>Translated_552_residues
MFAPVIPETQPTIKVSGLHAIAYCPRLFYLEEVEGLYTQDAAVFAGRRLHVDLEQEEEGEWEDLYLESEDLGIRGRVDAL
RTRNGLTIPYEHKRGKAARDDQKNPLPWESDHLQIISYCYLLEVSLGISISEGRIRYHADNVLIHVPFDETAKAEVREAI
ANARKLLDSDFRPPVTENERLCARCSLAPVCLPEEARLAHDREWQPIRLFPKDDDRQILHTLEPGTRVGRTGEQIKITRR
DQPIEKIAVQQVSQVVLHGFSQISTQALHFLASHNVGIHWISGGDRYIGSFDNRQGSIQRRIQQYRALSQTDFCVDLAKK
LVWCRGQGQRKFLMRGKRSNKASSPKLNEAISQMKRVLKQVENAENLATLLGIEGNLAALYFGALPCTLTATVPNELRFS
GRNRRPPKDRFNALLSFGYSLLLKDVMNSIIAVGLEPALGFYHQPRTQASPLALDLMEIFRVPLVDMVVIASINRSQWDI
TEDFSIRGQQVWLSDSGRKKFIECYERRKAELWKHPMLGYSLSYARLIELEVRLLEKEWSGEAGLFGQLIVR
>Mature_552_residues
MFAPVIPETQPTIKVSGLHAIAYCPRLFYLEEVEGLYTQDAAVFAGRRLHVDLEQEEEGEWEDLYLESEDLGIRGRVDAL
RTRNGLTIPYEHKRGKAARDDQKNPLPWESDHLQIISYCYLLEVSLGISISEGRIRYHADNVLIHVPFDETAKAEVREAI
ANARKLLDSDFRPPVTENERLCARCSLAPVCLPEEARLAHDREWQPIRLFPKDDDRQILHTLEPGTRVGRTGEQIKITRR
DQPIEKIAVQQVSQVVLHGFSQISTQALHFLASHNVGIHWISGGDRYIGSFDNRQGSIQRRIQQYRALSQTDFCVDLAKK
LVWCRGQGQRKFLMRGKRSNKASSPKLNEAISQMKRVLKQVENAENLATLLGIEGNLAALYFGALPCTLTATVPNELRFS
GRNRRPPKDRFNALLSFGYSLLLKDVMNSIIAVGLEPALGFYHQPRTQASPLALDLMEIFRVPLVDMVVIASINRSQWDI
TEDFSIRGQQVWLSDSGRKKFIECYERRKAELWKHPMLGYSLSYARLIELEVRLLEKEWSGEAGLFGQLIVR

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019858 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 62981; Mature: 62981

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAPVIPETQPTIKVSGLHAIAYCPRLFYLEEVEGLYTQDAAVFAGRRLHVDLEQEEEGE
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHCCHHHHCCCEEEEECCCCCCCC
WEDLYLESEDLGIRGRVDALRTRNGLTIPYEHKRGKAARDDQKNPLPWESDHLQIISYCY
HHHEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LLEVSLGISISEGRIRYHADNVLIHVPFDETAKAEVREAIANARKLLDSDFRPPVTENER
HHHHHCCEEEECCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LCARCSLAPVCLPEEARLAHDREWQPIRLFPKDDDRQILHTLEPGTRVGRTGEQIKITRR
HHHHCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECC
DQPIEKIAVQQVSQVVLHGFSQISTQALHFLASHNVGIHWISGGDRYIGSFDNRQGSIQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCHHHH
RIQQYRALSQTDFCVDLAKKLVWCRGQGQRKFLMRGKRSNKASSPKLNEAISQMKRVLKQ
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
VENAENLATLLGIEGNLAALYFGALPCTLTATVPNELRFSGRNRRPPKDRFNALLSFGYS
HHCHHHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHH
LLLKDVMNSIIAVGLEPALGFYHQPRTQASPLALDLMEIFRVPLVDMVVIASINRSQWDI
HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
TEDFSIRGQQVWLSDSGRKKFIECYERRKAELWKHPMLGYSLSYARLIELEVRLLEKEWS
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
GEAGLFGQLIVR
CCCCCHHHHHCC
>Mature Secondary Structure
MFAPVIPETQPTIKVSGLHAIAYCPRLFYLEEVEGLYTQDAAVFAGRRLHVDLEQEEEGE
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHCCHHHHCCCEEEEECCCCCCCC
WEDLYLESEDLGIRGRVDALRTRNGLTIPYEHKRGKAARDDQKNPLPWESDHLQIISYCY
HHHEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LLEVSLGISISEGRIRYHADNVLIHVPFDETAKAEVREAIANARKLLDSDFRPPVTENER
HHHHHCCEEEECCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LCARCSLAPVCLPEEARLAHDREWQPIRLFPKDDDRQILHTLEPGTRVGRTGEQIKITRR
HHHHCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECC
DQPIEKIAVQQVSQVVLHGFSQISTQALHFLASHNVGIHWISGGDRYIGSFDNRQGSIQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCHHHH
RIQQYRALSQTDFCVDLAKKLVWCRGQGQRKFLMRGKRSNKASSPKLNEAISQMKRVLKQ
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
VENAENLATLLGIEGNLAALYFGALPCTLTATVPNELRFSGRNRRPPKDRFNALLSFGYS
HHCHHHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHH
LLLKDVMNSIIAVGLEPALGFYHQPRTQASPLALDLMEIFRVPLVDMVVIASINRSQWDI
HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
TEDFSIRGQQVWLSDSGRKKFIECYERRKAELWKHPMLGYSLSYARLIELEVRLLEKEWS
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
GEAGLFGQLIVR
CCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]