| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is yrrL [H]
Identifier: 170078325
GI number: 170078325
Start: 1804188
End: 1805189
Strand: Direct
Name: yrrL [H]
Synonym: SYNPCC7002_A1718
Alternate gene names: 170078325
Gene position: 1804188-1805189 (Clockwise)
Preceding gene: 170078324
Following gene: 170078326
Centisome position: 59.98
GC content: 56.89
Gene sequence:
>1002_bases GTGGCGATCGCCTTTTGGCAGAGTTGGGCCTGGTGGCGGTGGGCGATCGCCCCTGGGGAAAATGCCGACCAGGCGGTACA ACTCGACATTCCGGTCGGTACGGGCGCAGCCCAAATTGGCGAAGATTTAACGGCTTTGGGTTTAATCCAATCGCCCAAGG CCTGGCAGATCTGGGTGAAGTGGCTCAGGCTCACGGATCGGGGCGGCAGTCTCAAGGCGGGCACCTATCAATTTCCGCCC AACCAAGATCTCCCGGCGATCGCCCAGCAAATTTGGTCGGGGGACGTGGTGCAGACGAGCGTGACGATCCCCGAAGGTTG GACGATCCAACAGATGGCAAACCGTTTTGAAGCTTTGGGGTTTTTTCCGGCCACGGAGTTTATTGCGGCGACCCAGACCA TCCCCCGCGAGCAATTTCCCTGGTTGCCAGCAGATTTAACCTCCTTAGAAGGCTTTTTATTTCCCGACACCTATTTTCTC GATACCGCCCAGCCCAGCCCCCCAGCGATCATTGAGCAGATGTTGGGCCAGTTTGAAGCGGTGGTCTTGCCCCTCTATGA TGCCGAAATAGTGCCCCTGGATTTGTCCCTCACAGAATGGGTGACCCTAGCGAGCATTGTGGAAAAAGAAGCGGTGATCC CTGAGGAGCGGCCGTTGATTGCCGGGGTATTTGTCAATCGTCTGGAACAGGGCATGCGCCTGGAAACAGACCCGACGGTG GAATATGGCCTCGGCATTCGCCAAACGAAGGAACAGCCCCTGACCCTTGAACAGGTACGCACCCCCAATCCCTACAACAC CTATCTCAATGAAGGTTTGCCACCAGGGGCGATCGCCTCACCGGGGTTAGCGAGTTTTCGAGCCACCTCCAATCCTGAAG CGACGGACTTTTTATTTTTCGTGGCCAACTACGACGGTACCCATGTTTTCAGTGAAACCCTGGCAGAACATGAAGCCGCC ACCCAACGGATCCGCGCCACCATCGACGGTGAGACGGAATAG
Upstream 100 bases:
>100_bases CTCCTGCTCCAAGATGCCGACTAATGCGCCCCCCAAAACGCAACCCTTAGCACAGCGAAAACGGGGCTTTCCTTGGTTTT CTGGGATCCTCGCCCTGACA
Downstream 100 bases:
>100_bases TTAAAAAATCAATCGCGACGATGTCTAGCTTGGTGCCCCAGTTAACCGCCGACGGTTCCTACACCTTTTTTTCGGAAGAG TTTCAGGAGCATTTTCACTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MAIAFWQSWAWWRWAIAPGENADQAVQLDIPVGTGAAQIGEDLTALGLIQSPKAWQIWVKWLRLTDRGGSLKAGTYQFPP NQDLPAIAQQIWSGDVVQTSVTIPEGWTIQQMANRFEALGFFPATEFIAATQTIPREQFPWLPADLTSLEGFLFPDTYFL DTAQPSPPAIIEQMLGQFEAVVLPLYDAEIVPLDLSLTEWVTLASIVEKEAVIPEERPLIAGVFVNRLEQGMRLETDPTV EYGLGIRQTKEQPLTLEQVRTPNPYNTYLNEGLPPGAIASPGLASFRATSNPEATDFLFFVANYDGTHVFSETLAEHEAA TQRIRATIDGETE
Sequences:
>Translated_333_residues MAIAFWQSWAWWRWAIAPGENADQAVQLDIPVGTGAAQIGEDLTALGLIQSPKAWQIWVKWLRLTDRGGSLKAGTYQFPP NQDLPAIAQQIWSGDVVQTSVTIPEGWTIQQMANRFEALGFFPATEFIAATQTIPREQFPWLPADLTSLEGFLFPDTYFL DTAQPSPPAIIEQMLGQFEAVVLPLYDAEIVPLDLSLTEWVTLASIVEKEAVIPEERPLIAGVFVNRLEQGMRLETDPTV EYGLGIRQTKEQPLTLEQVRTPNPYNTYLNEGLPPGAIASPGLASFRATSNPEATDFLFFVANYDGTHVFSETLAEHEAA TQRIRATIDGETE >Mature_332_residues AIAFWQSWAWWRWAIAPGENADQAVQLDIPVGTGAAQIGEDLTALGLIQSPKAWQIWVKWLRLTDRGGSLKAGTYQFPPN QDLPAIAQQIWSGDVVQTSVTIPEGWTIQQMANRFEALGFFPATEFIAATQTIPREQFPWLPADLTSLEGFLFPDTYFLD TAQPSPPAIIEQMLGQFEAVVLPLYDAEIVPLDLSLTEWVTLASIVEKEAVIPEERPLIAGVFVNRLEQGMRLETDPTVE YGLGIRQTKEQPLTLEQVRTPNPYNTYLNEGLPPGAIASPGLASFRATSNPEATDFLFFVANYDGTHVFSETLAEHEAAT QRIRATIDGETE
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=296, Percent_Identity=34.1216216216216, Blast_Score=156, Evalue=2e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 36919; Mature: 36788
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIAFWQSWAWWRWAIAPGENADQAVQLDIPVGTGAAQIGEDLTALGLIQSPKAWQIWVK CEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHCCCHHHHHHCCCCCHHHHHHH WLRLTDRGGSLKAGTYQFPPNQDLPAIAQQIWSGDVVQTSVTIPEGWTIQQMANRFEALG HHHHCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHC FFPATEFIAATQTIPREQFPWLPADLTSLEGFLFPDTYFLDTAQPSPPAIIEQMLGQFEA CCCHHHHHHHHHCCCHHHCCCCCCCHHHCCCEECCCEEEECCCCCCCHHHHHHHHCCHHE VVLPLYDAEIVPLDLSLTEWVTLASIVEKEAVIPEERPLIAGVFVNRLEQGMRLETDPTV EEEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCH EYGLGIRQTKEQPLTLEQVRTPNPYNTYLNEGLPPGAIASPGLASFRATSNPEATDFLFF HHCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEE VANYDGTHVFSETLAEHEAATQRIRATIDGETE EECCCCHHHHHHHHHHHHHHHHHHEEEECCCCC >Mature Secondary Structure AIAFWQSWAWWRWAIAPGENADQAVQLDIPVGTGAAQIGEDLTALGLIQSPKAWQIWVK EEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHCCCHHHHHHCCCCCHHHHHHH WLRLTDRGGSLKAGTYQFPPNQDLPAIAQQIWSGDVVQTSVTIPEGWTIQQMANRFEALG HHHHCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHC FFPATEFIAATQTIPREQFPWLPADLTSLEGFLFPDTYFLDTAQPSPPAIIEQMLGQFEA CCCHHHHHHHHHCCCHHHCCCCCCCHHHCCCEECCCEEEECCCCCCCHHHHHHHHCCHHE VVLPLYDAEIVPLDLSLTEWVTLASIVEKEAVIPEERPLIAGVFVNRLEQGMRLETDPTV EEEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCH EYGLGIRQTKEQPLTLEQVRTPNPYNTYLNEGLPPGAIASPGLASFRATSNPEATDFLFF HHCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEE VANYDGTHVFSETLAEHEAATQRIRATIDGETE EECCCCHHHHHHHHHHHHHHHHHHEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]