| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078204
Identifier: 170078204
GI number: 170078204
Start: 1674854
End: 1675576
Strand: Reverse
Name: 170078204
Synonym: SYNPCC7002_A1595
Alternate gene names: NA
Gene position: 1675576-1674854 (Counterclockwise)
Preceding gene: 170078213
Following gene: 170078203
Centisome position: 55.7
GC content: 47.03
Gene sequence:
>723_bases ATGGCCGCCACCCTCAAATCTTCTAATTTAGATCTACTGAAACGTTTCAACCGTTCATTTCCCGAATTTTACGAACAATT CGTCAGTAGCGAAGCGCAATTTCAAAATCTCCAGTTAGCCTACCAGCTCTACCGGGCCAAGAAGCCGATTGTTGAGATTA ATCCCGAAGGCAACCGGAGCATCTTCCAGTTTGCCTACCGAAACCAATCTTTTCTTTTAAGTGATATTTTCGGCATTCTC TTAGCCTACGGTTTGAAGATCCATAGCCTCAGTTTGTATGGGCAGATCCAAGCGCCGATGCTCGTTTTTATTAAAATTAG TCTTGATCGCAATAATCAGCCCCTCGCCCCAAATACCGCCGGAAACGTCTGTCGAGCGGTGCGGGAAGCCCTGGCTGGGC GCTTTGAAGTAGAGGAAATGTTGGCCGTCGAGTTTGATTTTGCAGAGGGGCTCGCCGAGGTGCATACGGAATTTTACATT GACCCTGTTTTCCATCTGCCGACTTTAATCATCGAAGCTAAGGGGCAGGAAGGTTTGTTATACCGGGCCATGTATGCGAT TTGGCAGGAAGATTTGTTAGTGATTAATGCGAATTTGGTGTCTTGGCGCGGCAATGCAAGGCTGATTTTGTATCTTTTTG GCCCCAATGAAAGTGCGATTCCTGAGTATTTAGGTCAACGGATTGCGAGTAATGTGCGCGATCGCCTGTTGCACCTTTCA TGA
Upstream 100 bases:
>100_bases TCCTGGAGTACACTGTAGAAAATAAGGGTTATTCGGAGATCACAAACGCATCATCGTCTTTATCGTTGAGTATCTTTAGC CCCACTGCCCCCCATTAACT
Downstream 100 bases:
>100_bases TGTCCCTAGACAGGGCAACCTGGGAGAACGCTCTTGGGTAAAATATAAAAATGATCGAAATGTGAGCCCATTGGTAACAA GACTTTATGGCAACAACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MAATLKSSNLDLLKRFNRSFPEFYEQFVSSEAQFQNLQLAYQLYRAKKPIVEINPEGNRSIFQFAYRNQSFLLSDIFGIL LAYGLKIHSLSLYGQIQAPMLVFIKISLDRNNQPLAPNTAGNVCRAVREALAGRFEVEEMLAVEFDFAEGLAEVHTEFYI DPVFHLPTLIIEAKGQEGLLYRAMYAIWQEDLLVINANLVSWRGNARLILYLFGPNESAIPEYLGQRIASNVRDRLLHLS
Sequences:
>Translated_240_residues MAATLKSSNLDLLKRFNRSFPEFYEQFVSSEAQFQNLQLAYQLYRAKKPIVEINPEGNRSIFQFAYRNQSFLLSDIFGIL LAYGLKIHSLSLYGQIQAPMLVFIKISLDRNNQPLAPNTAGNVCRAVREALAGRFEVEEMLAVEFDFAEGLAEVHTEFYI DPVFHLPTLIIEAKGQEGLLYRAMYAIWQEDLLVINANLVSWRGNARLILYLFGPNESAIPEYLGQRIASNVRDRLLHLS >Mature_239_residues AATLKSSNLDLLKRFNRSFPEFYEQFVSSEAQFQNLQLAYQLYRAKKPIVEINPEGNRSIFQFAYRNQSFLLSDIFGILL AYGLKIHSLSLYGQIQAPMLVFIKISLDRNNQPLAPNTAGNVCRAVREALAGRFEVEEMLAVEFDFAEGLAEVHTEFYID PVFHLPTLIIEAKGQEGLLYRAMYAIWQEDLLVINANLVSWRGNARLILYLFGPNESAIPEYLGQRIASNVRDRLLHLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27426; Mature: 27295
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATLKSSNLDLLKRFNRSFPEFYEQFVSSEAQFQNLQLAYQLYRAKKPIVEINPEGNRS CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCH IFQFAYRNQSFLLSDIFGILLAYGLKIHSLSLYGQIQAPMLVFIKISLDRNNQPLAPNTA HHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCH GNVCRAVREALAGRFEVEEMLAVEFDFAEGLAEVHTEFYIDPVFHLPTLIIEAKGQEGLL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCHH YRAMYAIWQEDLLVINANLVSWRGNARLILYLFGPNESAIPEYLGQRIASNVRDRLLHLS HHHHHHHHHCCEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AATLKSSNLDLLKRFNRSFPEFYEQFVSSEAQFQNLQLAYQLYRAKKPIVEINPEGNRS CCCCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCH IFQFAYRNQSFLLSDIFGILLAYGLKIHSLSLYGQIQAPMLVFIKISLDRNNQPLAPNTA HHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCH GNVCRAVREALAGRFEVEEMLAVEFDFAEGLAEVHTEFYIDPVFHLPTLIIEAKGQEGLL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCHH YRAMYAIWQEDLLVINANLVSWRGNARLILYLFGPNESAIPEYLGQRIASNVRDRLLHLS HHHHHHHHHCCEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA