| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078146
Identifier: 170078146
GI number: 170078146
Start: 1621268
End: 1622755
Strand: Direct
Name: 170078146
Synonym: SYNPCC7002_A1537
Alternate gene names: NA
Gene position: 1621268-1622755 (Clockwise)
Preceding gene: 170078140
Following gene: 170078148
Centisome position: 53.9
GC content: 52.76
Gene sequence:
>1488_bases ATGGGGGTGTTGACCTATGCCCTCATCCGCCGCACTGTACCACCAGAAAATAAAGCACCATTAAGCTTACTCTGGCTGGT GATGATGTTGCCTGCTTCCGCCTGGCTAGTCTGGATTTTAATTTTTGGGGCGACCCAGCCGATGCCCTTGTTGCTGATGT TGCCACTGTTGATCCTTTCGCCGTTTATGTATTGGAGTTTGTTGGACTGGGGTAAACCCAAACCGGACGAATCTTCTGAC CCCAGCCCGCCACCCGCTGCACCCCAGACCCCAAGCTTAGATTTAGAAAAATTAGACCAAGCTTCTGCCCTGAAAAAGGA AGGCTCTAAGCTCCGCCCGATCAGTACCAAGGAAGAAAAAGCACTCCGGGATTGTTTTCCCTGGGGGGTTTATTATCTCC AGAATATTGACTACTATCCCCAGGCGATCCTCTGTCGGGGCAAGTTGCGGGCGGTCCCCCAGGAAGCCTACCAAACGATT CGGGAAAATATCGAACAGCTCTTTGGCGATCGCTTTATTGTGGTCTTCCAAGAAAGTCTGCGGGGGCAACCGTTTTTTGC CCTTGTTCCCAACCCTTGGAAAGCGGCCCAACAATCCCAAACCAAAGAGGAACCCCTAACGCGCCCGGATTTGGCGATCG CCTTGGTGTTAATTACTTTATTTACCACCACCGTGATGGGTTTGGAATTGCAGGGAGTGGCTCCGGAGGTGATCCAACAG AACCCGAGCATGCTTTGGCAGGGCTTACCCTATGGTCTGCTGTTAGTCGCAATTCTCGGTTGCCATGAACTGGGCCATTA CGGTGCGGCGGCCTATTACAAAATTAAAACGACGCTCCCCTATTTCGTCCCGATTCCCTTCTTTATCGGTACCCTGGGGG CCTATACCCAGCGGAAATCCCCCATTCCCCATCGCCAAGCTTTGTTTGATTTTGCGGTGGCAGGCTCTTGGGTGGGGATG CTCCTGACCCTGCCTTGTTTGTGGGTGGGCCTGGGCTTGTCCCAAGTGGTACCCTTGCCAGAGGAATCAACGCTGTTGGC CTTTAATGAGTTTAATCCAAGGTTTTCTCTCCTCCTGGGACTGATGAGCCGTTTGGCCCTAGGAAGTCAGTTCACCCCGG ACATGGCCCTGGATTTACACCCGGTGGCGATCGCCGGTTATGTGGCCCTGATGTTGGGGAGCTTGCAACTCCTACCCATC GGTCAATTGGATGGTGGTTTGATGACCCATGCCGTTTTTGGCCAACGGACGGCGAGCATTATTGCCCAGGTGACAAGGAT TTGTATGATTGCGATCGCCTTTGTGCAGCCGAATTTTCTCTTCCTGGCGATTTTCGCCCTGCTGATGCCTATCGCGAACC AGCCCGCCCTTAACGATGTGACGGATTTGGACAATCGCCGCGACCTGTTGGGGATGTTTACCCTGGTTTTTGTGGCGTTA ATTTTCTTGCCGTTACCCGCTGGCTTGAGTAATTGGCTCAATTTTTAG
Upstream 100 bases:
>100_bases CGATCGCCACAAAGCAGGGGCAATCATTTTGCTTGTGCCACACATTTTCTAGTAAGGATTCAATTGAAAGTTCATGGAAG TTTGGCTGCTTTTCTTCGTT
Downstream 100 bases:
>100_bases GGGTTAATTTCCGTTTTGAGGGTTGCATAAAGACTGTCCCTGAGGGGCTGTAATTGCAAGTCAAACCGAGGTTTATAGAC AACGGACGGGAAAAATTCGC
Product: membrane-associated Zn-dependent proteases 1
Products: NA
Alternate protein names: Peptidase; Membrane-Associated Zn-Dependent Protease; M50 Family Peptidase; Metalloprotease; Membrane-Associated Metallopeptidase; Zinc Metalloprotease; Zinc Protease; M50 Family Metallopeptidase; M50B Family Peptidase; Membrane Associated Metalloprotease; S2P Family Metalloprotease; Integral Membrane Protease
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MGVLTYALIRRTVPPENKAPLSLLWLVMMLPASAWLVWILIFGATQPMPLLLMLPLLILSPFMYWSLLDWGKPKPDESSD PSPPPAAPQTPSLDLEKLDQASALKKEGSKLRPISTKEEKALRDCFPWGVYYLQNIDYYPQAILCRGKLRAVPQEAYQTI RENIEQLFGDRFIVVFQESLRGQPFFALVPNPWKAAQQSQTKEEPLTRPDLAIALVLITLFTTTVMGLELQGVAPEVIQQ NPSMLWQGLPYGLLLVAILGCHELGHYGAAAYYKIKTTLPYFVPIPFFIGTLGAYTQRKSPIPHRQALFDFAVAGSWVGM LLTLPCLWVGLGLSQVVPLPEESTLLAFNEFNPRFSLLLGLMSRLALGSQFTPDMALDLHPVAIAGYVALMLGSLQLLPI GQLDGGLMTHAVFGQRTASIIAQVTRICMIAIAFVQPNFLFLAIFALLMPIANQPALNDVTDLDNRRDLLGMFTLVFVAL IFLPLPAGLSNWLNF
Sequences:
>Translated_495_residues MGVLTYALIRRTVPPENKAPLSLLWLVMMLPASAWLVWILIFGATQPMPLLLMLPLLILSPFMYWSLLDWGKPKPDESSD PSPPPAAPQTPSLDLEKLDQASALKKEGSKLRPISTKEEKALRDCFPWGVYYLQNIDYYPQAILCRGKLRAVPQEAYQTI RENIEQLFGDRFIVVFQESLRGQPFFALVPNPWKAAQQSQTKEEPLTRPDLAIALVLITLFTTTVMGLELQGVAPEVIQQ NPSMLWQGLPYGLLLVAILGCHELGHYGAAAYYKIKTTLPYFVPIPFFIGTLGAYTQRKSPIPHRQALFDFAVAGSWVGM LLTLPCLWVGLGLSQVVPLPEESTLLAFNEFNPRFSLLLGLMSRLALGSQFTPDMALDLHPVAIAGYVALMLGSLQLLPI GQLDGGLMTHAVFGQRTASIIAQVTRICMIAIAFVQPNFLFLAIFALLMPIANQPALNDVTDLDNRRDLLGMFTLVFVAL IFLPLPAGLSNWLNF >Mature_494_residues GVLTYALIRRTVPPENKAPLSLLWLVMMLPASAWLVWILIFGATQPMPLLLMLPLLILSPFMYWSLLDWGKPKPDESSDP SPPPAAPQTPSLDLEKLDQASALKKEGSKLRPISTKEEKALRDCFPWGVYYLQNIDYYPQAILCRGKLRAVPQEAYQTIR ENIEQLFGDRFIVVFQESLRGQPFFALVPNPWKAAQQSQTKEEPLTRPDLAIALVLITLFTTTVMGLELQGVAPEVIQQN PSMLWQGLPYGLLLVAILGCHELGHYGAAAYYKIKTTLPYFVPIPFFIGTLGAYTQRKSPIPHRQALFDFAVAGSWVGML LTLPCLWVGLGLSQVVPLPEESTLLAFNEFNPRFSLLLGLMSRLALGSQFTPDMALDLHPVAIAGYVALMLGSLQLLPIG QLDGGLMTHAVFGQRTASIIAQVTRICMIAIAFVQPNFLFLAIFALLMPIANQPALNDVTDLDNRRDLLGMFTLVFVALI FLPLPAGLSNWLNF
Specific function: Unknown
COG id: COG0750
COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54929; Mature: 54798
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVLTYALIRRTVPPENKAPLSLLWLVMMLPASAWLVWILIFGATQPMPLLLMLPLLILS CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH PFMYWSLLDWGKPKPDESSDPSPPPAAPQTPSLDLEKLDQASALKKEGSKLRPISTKEEK HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH ALRDCFPWGVYYLQNIDYYPQAILCRGKLRAVPQEAYQTIRENIEQLFGDRFIVVFQESL HHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEHHH RGQPFFALVPNPWKAAQQSQTKEEPLTRPDLAIALVLITLFTTTVMGLELQGVAPEVIQQ CCCCEEEECCCCHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCHHHHHC NPSMLWQGLPYGLLLVAILGCHELGHYGAAAYYKIKTTLPYFVPIPFFIGTLGAYTQRKS CHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC PIPHRQALFDFAVAGSWVGMLLTLPCLWVGLGLSQVVPLPEESTLLAFNEFNPRFSLLLG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCHHHHHHHH LMSRLALGSQFTPDMALDLHPVAIAGYVALMLGSLQLLPIGQLDGGLMTHAVFGQRTASI HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH IAQVTRICMIAIAFVQPNFLFLAIFALLMPIANQPALNDVTDLDNRRDLLGMFTLVFVAL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH IFLPLPAGLSNWLNF HHHCCCCCHHHHCCC >Mature Secondary Structure GVLTYALIRRTVPPENKAPLSLLWLVMMLPASAWLVWILIFGATQPMPLLLMLPLLILS CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH PFMYWSLLDWGKPKPDESSDPSPPPAAPQTPSLDLEKLDQASALKKEGSKLRPISTKEEK HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH ALRDCFPWGVYYLQNIDYYPQAILCRGKLRAVPQEAYQTIRENIEQLFGDRFIVVFQESL HHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEHHH RGQPFFALVPNPWKAAQQSQTKEEPLTRPDLAIALVLITLFTTTVMGLELQGVAPEVIQQ CCCCEEEECCCCHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCHHHHHC NPSMLWQGLPYGLLLVAILGCHELGHYGAAAYYKIKTTLPYFVPIPFFIGTLGAYTQRKS CHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC PIPHRQALFDFAVAGSWVGMLLTLPCLWVGLGLSQVVPLPEESTLLAFNEFNPRFSLLLG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCHHHHHHHH LMSRLALGSQFTPDMALDLHPVAIAGYVALMLGSLQLLPIGQLDGGLMTHAVFGQRTASI HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH IAQVTRICMIAIAFVQPNFLFLAIFALLMPIANQPALNDVTDLDNRRDLLGMFTLVFVAL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH IFLPLPAGLSNWLNF HHHCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA