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The map label for this gene is ribD [H]

Identifier: 170078074

GI number: 170078074

Start: 1540354

End: 1541469

Strand: Direct

Name: ribD [H]

Synonym: SYNPCC7002_A1465

Alternate gene names: 170078074

Gene position: 1540354-1541469 (Clockwise)

Preceding gene: 170078071

Following gene: 170078084

Centisome position: 51.21

GC content: 54.57

Gene sequence:

>1116_bases
ATGACCTCAAACGCTGCCCCCGTTGGAACTGACTTTGATCGTGCCATGATGCAACGCTGTATTACGTTAGCAAAGCAGGC
AGCCGGAAAAACCGCCCCCAACCCAATGGTGGGTGCTGTGGTCGTTCAGGATCAAAAAATTATTGGCGAAGGATTTCACC
CAGGGGCAGGTCAACCCCATGCAGAGGTGTTTGCGCTCCGGGAGGCAGGGGCAGCGGCTCAAGGGGCAACGCTCTATGTC
AGCCTAGAACCCTGTAACCACCACGGCAGAACACCCCCCTGTAGTCAAGCTGTGGTCAAAGCGGGCATCTCTAAGGTCGT
AGTCGGCATGGTCGATCCGAATCCTTTAGTGGCAGGGGGCGGTTTAAAAACCCTCACGGATGCGGGCATCGAAGTCGTAA
CGGGTGTTGAAGAGGCCGCTTGTCGGGCCTTAAATGCGGGTTTTGTTTGGCGGATGGTGCATCAGCGTCCCCTCGGCATT
TTGAAGTATGCCATGACCCTCGATGGAAAAATTGCCACAACCACGGGCCACAGTGCTTGGATTACTCACCAGGAAACCCG
CAACCAGGTCTATGATCTTCGTTCCCAGTGTGATGCAGTGGTTGTCGGGGGAAATACGGTACGCCTGGATGATCCCTATT
TAACGACCCATGGTACCGCTGACCATAATCCTTTGCGCATTGTTGTGAGCCAAACTTTAACCCTGCCCCGCGATCGCCAT
TTGTGGGATGTGACCGCTGCGCCGACGGTGGTTTTAACCCAGGCCACAGCGAATCCAGAAATGCAGGCTTTCCTCCGGCA
ACAGGGAGTAGAAGTGGTACACCTTGATCCGGTTTCCCCTGAGGGCGTGATGCAATATCTCTACGACCGGGGGTGTTTGC
AGGTGTTGTGGGAATGTGGCGGTACCCTCGCGGCGGCGGCGATCGCCTCTGGCAGTATTCAGAAAGTGATGGCTTTCATC
GCCCCGAAAATTATTGGTGGGCAAGGGGCACCGACACCCGTGGGAAATTTGGGTCTGACGCTCATGGACGAGGCGATCAC
CCTCGAAAATGTTCAACTTCAATCCATCGGCCATGATTTTCTGTTAACAGGCGATCTCCCCAATTTGAAAAAATAA

Upstream 100 bases:

>100_bases
TGAATTTCTCCACCATCGGTTAACCTTTGACCCTATGTTTGCCCCTCGGTTCTTGCCTACAATGGGAAAGAATTTTTAAG
TTTAAATGTTGCCTTCCCCC

Downstream 100 bases:

>100_bases
TTTGTCGCACTAGGCTTCAGACGAGGCGTAACCAGGCAAATAATTCTGTGGCGGTGAGTTGCCAAGGGGCGATCGCTGGC
AAAACGGGAAGCGGATCGTC

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MTSNAAPVGTDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREAGAAAQGATLYV
SLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAGIEVVTGVEEAACRALNAGFVWRMVHQRPLGI
LKYAMTLDGKIATTTGHSAWITHQETRNQVYDLRSQCDAVVVGGNTVRLDDPYLTTHGTADHNPLRIVVSQTLTLPRDRH
LWDVTAAPTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAAIASGSIQKVMAFI
APKIIGGQGAPTPVGNLGLTLMDEAITLENVQLQSIGHDFLLTGDLPNLKK

Sequences:

>Translated_371_residues
MTSNAAPVGTDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREAGAAAQGATLYV
SLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAGIEVVTGVEEAACRALNAGFVWRMVHQRPLGI
LKYAMTLDGKIATTTGHSAWITHQETRNQVYDLRSQCDAVVVGGNTVRLDDPYLTTHGTADHNPLRIVVSQTLTLPRDRH
LWDVTAAPTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAAIASGSIQKVMAFI
APKIIGGQGAPTPVGNLGLTLMDEAITLENVQLQSIGHDFLLTGDLPNLKK
>Mature_370_residues
TSNAAPVGTDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREAGAAAQGATLYVS
LEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAGIEVVTGVEEAACRALNAGFVWRMVHQRPLGIL
KYAMTLDGKIATTTGHSAWITHQETRNQVYDLRSQCDAVVVGGNTVRLDDPYLTTHGTADHNPLRIVVSQTLTLPRDRHL
WDVTAAPTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAAIASGSIQKVMAFIA
PKIIGGQGAPTPVGNLGLTLMDEAITLENVQLQSIGHDFLLTGDLPNLKK

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=341, Percent_Identity=39.2961876832845, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI145693172, Length=153, Percent_Identity=35.2941176470588, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 39252; Mature: 39120

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNAAPVGTDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPH
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCCH
AEVFALREAGAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGG
HHEEEEHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCHHHEEEEEECCCCEEECC
GLKTLTDAGIEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAW
CCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHEECCEEEEECCCCEE
ITHQETRNQVYDLRSQCDAVVVGGNTVRLDDPYLTTHGTADHNPLRIVVSQTLTLPRDRH
EECHHHHHHHHHHHHHCCEEEECCCEEEECCCEEEECCCCCCCCEEEEEEHHCCCCCCCC
LWDVTAAPTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECG
EEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
GTLAAAAIASGSIQKVMAFIAPKIIGGQGAPTPVGNLGLTLMDEAITLENVQLQSIGHDF
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEECCEEHHHCCCCE
LLTGDLPNLKK
EEECCCCCCCC
>Mature Secondary Structure 
TSNAAPVGTDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPH
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCCH
AEVFALREAGAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGG
HHEEEEHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCHHHEEEEEECCCCEEECC
GLKTLTDAGIEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAW
CCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHEECCEEEEECCCCEE
ITHQETRNQVYDLRSQCDAVVVGGNTVRLDDPYLTTHGTADHNPLRIVVSQTLTLPRDRH
EECHHHHHHHHHHHHHCCEEEECCCEEEECCCEEEECCCCCCCCEEEEEEHHCCCCCCCC
LWDVTAAPTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECG
EEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
GTLAAAAIASGSIQKVMAFIAPKIIGGQGAPTPVGNLGLTLMDEAITLENVQLQSIGHDF
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEECCEEHHHCCCCE
LLTGDLPNLKK
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]