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The map label for this gene is yohD [C]

Identifier: 170078071

GI number: 170078071

Start: 1537195

End: 1537821

Strand: Direct

Name: yohD [C]

Synonym: SYNPCC7002_A1462

Alternate gene names: 170078071

Gene position: 1537195-1537821 (Clockwise)

Preceding gene: 170078066

Following gene: 170078074

Centisome position: 51.1

GC content: 51.2

Gene sequence:

>627_bases
ATGACCCTTGAGTTGATTTCCCTAGAAACCCTGCAAACCCTCGTCACAGAATATGGCTATTGGTCTGTTTTTATCGGCAT
CGGCCTGGAAAATATGGGTATCCCCCTCCCCGGAGAAGCGTTAACCCTGCTGGGGGGCTTTTTTGCCGGGAGTGGCGAGC
TGCAATACCGCTGGGTTTTGTGTGGGGCGATCGCCGGATCATTCATCGGCAATAATATCGGCTACCTGGTGGGAAAGTGG
GGTGGGTTGCCGCTGCTCCAGAAAGTAGCCCATTTTTTTAAAATTAGTGACGAAAAGCTCGCCGAAACTAAACAAAAGTT
TTTAGAAAATGCTCCTAAAGCTGTTTTTATTGGTCGGTTTATCACCTTTTTTCGGATTTTTGCCGCTCCCTTCGCCGGCA
TTGTGGGGATGGCCTGGCCGATCTTTCTGTTGTGCAATTTAGCGGGGGCGATCGCCTGGGGAACAGTGACGGTGACACTC
CCCTATTTCCTCGGACGCATCATGCCCCTGGCGGATGTGTTGCGGTTCATGGCGAAATTCGGTCTCCTTGTTTTTGCCTT
CGTCGCAGCCTGGATTATTGTTCCCCTGTGGTTGGAGTATCGCCCCCGCAACCAACCAGAAAAATAA

Upstream 100 bases:

>100_bases
CCTGGCAACTTGGGTGACAACCTACCCCGAAAGTTACAGTAGCGGCCCCCGTCCGCCGAAAAGGAGTGTCAAAATATAAA
CATTGTCTTAAATTTTCTCC

Downstream 100 bases:

>100_bases
GCCGCGATAAGCAAGTTTTCGCGTTTACCCCAGCAAGCCGCAATCTGACCAGATTAACTAGCAGAAAAATTGCGCGCTAG
TCACCCCTAATGATTCAGTG

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTLELISLETLQTLVTEYGYWSVFIGIGLENMGIPLPGEALTLLGGFFAGSGELQYRWVLCGAIAGSFIGNNIGYLVGKW
GGLPLLQKVAHFFKISDEKLAETKQKFLENAPKAVFIGRFITFFRIFAAPFAGIVGMAWPIFLLCNLAGAIAWGTVTVTL
PYFLGRIMPLADVLRFMAKFGLLVFAFVAAWIIVPLWLEYRPRNQPEK

Sequences:

>Translated_208_residues
MTLELISLETLQTLVTEYGYWSVFIGIGLENMGIPLPGEALTLLGGFFAGSGELQYRWVLCGAIAGSFIGNNIGYLVGKW
GGLPLLQKVAHFFKISDEKLAETKQKFLENAPKAVFIGRFITFFRIFAAPFAGIVGMAWPIFLLCNLAGAIAWGTVTVTL
PYFLGRIMPLADVLRFMAKFGLLVFAFVAAWIIVPLWLEYRPRNQPEK
>Mature_207_residues
TLELISLETLQTLVTEYGYWSVFIGIGLENMGIPLPGEALTLLGGFFAGSGELQYRWVLCGAIAGSFIGNNIGYLVGKWG
GLPLLQKVAHFFKISDEKLAETKQKFLENAPKAVFIGRFITFFRIFAAPFAGIVGMAWPIFLLCNLAGAIAWGTVTVTLP
YFLGRIMPLADVLRFMAKFGLLVFAFVAAWIIVPLWLEYRPRNQPEK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=160, Percent_Identity=33.75, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23062; Mature: 22931

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLELISLETLQTLVTEYGYWSVFIGIGLENMGIPLPGEALTLLGGFFAGSGELQYRWVL
CCEEHHHHHHHHHHHHHCCHHHHHEECCHHHCCCCCCCHHHHHHHHHHCCCCCEEEHHHH
CGAIAGSFIGNNIGYLVGKWGGLPLLQKVAHFFKISDEKLAETKQKFLENAPKAVFIGRF
HHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
ITFFRIFAAPFAGIVGMAWPIFLLCNLAGAIAWGTVTVTLPYFLGRIMPLADVLRFMAKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH
GLLVFAFVAAWIIVPLWLEYRPRNQPEK
HHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TLELISLETLQTLVTEYGYWSVFIGIGLENMGIPLPGEALTLLGGFFAGSGELQYRWVL
CEEHHHHHHHHHHHHHCCHHHHHEECCHHHCCCCCCCHHHHHHHHHHCCCCCEEEHHHH
CGAIAGSFIGNNIGYLVGKWGGLPLLQKVAHFFKISDEKLAETKQKFLENAPKAVFIGRF
HHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
ITFFRIFAAPFAGIVGMAWPIFLLCNLAGAIAWGTVTVTLPYFLGRIMPLADVLRFMAKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH
GLLVFAFVAAWIIVPLWLEYRPRNQPEK
HHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]