| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is ybhG [C]
Identifier: 170078070
GI number: 170078070
Start: 1535639
End: 1537018
Strand: Reverse
Name: ybhG [C]
Synonym: SYNPCC7002_A1461
Alternate gene names: 170078070
Gene position: 1537018-1535639 (Counterclockwise)
Preceding gene: 170078072
Following gene: 170078069
Centisome position: 51.1
GC content: 57.46
Gene sequence:
>1380_bases GTGACCCAACTCGCCCCGAAACCAGATCCGACTGATAATCCAGCGATCACCTCTCAATCGAAGCGGCTACCCTGGCTTGG TTTGGTGGTCGGAATTTTGATCGGGGCGATCGCCACCTATGTGGGGGGGCAATTTTCCAGCTCCCAACCGGAAGAAACCT CATCCGCCCCAACGACAAATCCCAATCAAGCCCCTGGGCGAGCTGTCACGACCTTGACCCTCGAACCCCAGGCGATCGCC AAAACCATGGCCATTGTGGGTACCGTCACCCCCGCCGAGATCGTAGCGGTTACGGCGGCCCGTTCGGGTCTCCAGATCAC CAATCTCCTGGTGGATGAAGGGGACAATGTCCAAGCCGGTCAACTGCTGGCCCAACTGGATAATGCCACCCTCCAGGCAG AACTCCGCCAAGCCCAAGCCCAGGTCGCCCAAGCCCAAGCCCGCCTCGCCGAACTCAGAGCCGGAGCCCGCTCCGAAGAA CTTGCCCGCGCCCAGGAACAAGTGAACCAAGCCAGGGCGGCCCTCGGTCGGAGCCAAGCGGATCTCAAGCTGAGCGAACA ACGCCTACAACGGAACCAAGAATTATTTGAAGCTGGGGCGATCGCCGCCGATACCCTCGATGAAACCCGCACCCGTCGCG ATGGTGCCGCCGCCAGTGTCAGTCAAAATCAGGCCACATTACGGGAAGCCGAACAACGCCTGCAAGAATTGCGCCGTGGC CCCCGTCTTGAAACCCTGGCCCAGGCAGAAGCCCAACTACAACAGGCCCAGGCCCAGGTTAGCCTAGTGACCACCCGGTT ACGGGAGACCCAAGTCCGGGCACCGCGCCCCGGTAAAATCCTCGAAAAATTCGCTCAACTCGGTGATCTCAGTACCGCCA ATGAACCACTATTTAATCTTTTAGAAGCAGGGCAATTGGAACTCGAAGCAAACATTCCCGAAACCCAACTGAATCAGGTC GAAATCGGTCAAACCGTCGCGATTACCAGTGATCGCGATCCCAATCTTCAACTCACGGGGCAGATCCAAGAGATTGTCCC CACCGTTGACCGACAATCCCGCCAGGCAACCCTAAAAATTAGTTTGCCCCCAGGGACAGACCTCAAGCCAGGGATGTTTT TGCGGGGCAATATCATTCTGGCCCAGGCCCAGGGGATCGGTGTACCGACAGAAGCCGTAATTCCCCAGGATGGCGATCAG GCAACGGTTTTCCGGGTGAATGATGACAATACTGTCACCGCCGTCACCGTCGAACTTGGGGAACTTTTAGACGACAATCA GATTGAAGTTTTAGGGGGGTTGCAAGCGGGCGATCGCCTGGTGGTGAAGGGAGCACCTTATTTGAAAGATGGGGACGCCA TCGAAATCCAACCCTTCTAA
Upstream 100 bases:
>100_bases TAGGTTGTCACCCAAGTTGCCAGGGACTTCTGGCGAAAGCCACCAAATCAGCCCAAAATTTTTTAAGATAATTATTAAGC AATATTACAAATATCCCATC
Downstream 100 bases:
>100_bases TAGGCATTGTTTACCTAGCGAAAATCGAGGCGGTGAAATCTTAAGTTTTAATGCTTTTTCCTAAAGAAAAATTTTTACTT AAGACGTAATTTTATATTTG
Product: membrane-fusion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MTQLAPKPDPTDNPAITSQSKRLPWLGLVVGILIGAIATYVGGQFSSSQPEETSSAPTTNPNQAPGRAVTTLTLEPQAIA KTMAIVGTVTPAEIVAVTAARSGLQITNLLVDEGDNVQAGQLLAQLDNATLQAELRQAQAQVAQAQARLAELRAGARSEE LARAQEQVNQARAALGRSQADLKLSEQRLQRNQELFEAGAIAADTLDETRTRRDGAAASVSQNQATLREAEQRLQELRRG PRLETLAQAEAQLQQAQAQVSLVTTRLRETQVRAPRPGKILEKFAQLGDLSTANEPLFNLLEAGQLELEANIPETQLNQV EIGQTVAITSDRDPNLQLTGQIQEIVPTVDRQSRQATLKISLPPGTDLKPGMFLRGNIILAQAQGIGVPTEAVIPQDGDQ ATVFRVNDDNTVTAVTVELGELLDDNQIEVLGGLQAGDRLVVKGAPYLKDGDAIEIQPF
Sequences:
>Translated_459_residues MTQLAPKPDPTDNPAITSQSKRLPWLGLVVGILIGAIATYVGGQFSSSQPEETSSAPTTNPNQAPGRAVTTLTLEPQAIA KTMAIVGTVTPAEIVAVTAARSGLQITNLLVDEGDNVQAGQLLAQLDNATLQAELRQAQAQVAQAQARLAELRAGARSEE LARAQEQVNQARAALGRSQADLKLSEQRLQRNQELFEAGAIAADTLDETRTRRDGAAASVSQNQATLREAEQRLQELRRG PRLETLAQAEAQLQQAQAQVSLVTTRLRETQVRAPRPGKILEKFAQLGDLSTANEPLFNLLEAGQLELEANIPETQLNQV EIGQTVAITSDRDPNLQLTGQIQEIVPTVDRQSRQATLKISLPPGTDLKPGMFLRGNIILAQAQGIGVPTEAVIPQDGDQ ATVFRVNDDNTVTAVTVELGELLDDNQIEVLGGLQAGDRLVVKGAPYLKDGDAIEIQPF >Mature_458_residues TQLAPKPDPTDNPAITSQSKRLPWLGLVVGILIGAIATYVGGQFSSSQPEETSSAPTTNPNQAPGRAVTTLTLEPQAIAK TMAIVGTVTPAEIVAVTAARSGLQITNLLVDEGDNVQAGQLLAQLDNATLQAELRQAQAQVAQAQARLAELRAGARSEEL ARAQEQVNQARAALGRSQADLKLSEQRLQRNQELFEAGAIAADTLDETRTRRDGAAASVSQNQATLREAEQRLQELRRGP RLETLAQAEAQLQQAQAQVSLVTTRLRETQVRAPRPGKILEKFAQLGDLSTANEPLFNLLEAGQLELEANIPETQLNQVE IGQTVAITSDRDPNLQLTGQIQEIVPTVDRQSRQATLKISLPPGTDLKPGMFLRGNIILAQAQGIGVPTEAVIPQDGDQA TVFRVNDDNTVTAVTVELGELLDDNQIEVLGGLQAGDRLVVKGAPYLKDGDAIEIQPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1787013, Length=304, Percent_Identity=32.5657894736842, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1789929, Length=435, Percent_Identity=23.2183908045977, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789900, Length=283, Percent_Identity=25.4416961130742, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 49117; Mature: 48986
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLAPKPDPTDNPAITSQSKRLPWLGLVVGILIGAIATYVGGQFSSSQPEETSSAPTTN CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PNQAPGRAVTTLTLEPQAIAKTMAIVGTVTPAEIVAVTAARSGLQITNLLVDEGDNVQAG CCCCCCCEEEEEEECHHHHHHHHHHHCCCCHHHHHEEHHHCCCCEEEEEEECCCCCCHHH QLLAQLDNATLQAELRQAQAQVAQAQARLAELRAGARSEELARAQEQVNQARAALGRSQA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC DLKLSEQRLQRNQELFEAGAIAADTLDETRTRRDGAAASVSQNQATLREAEQRLQELRRG CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC PRLETLAQAEAQLQQAQAQVSLVTTRLRETQVRAPRPGKILEKFAQLGDLSTANEPLFNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHH LEAGQLELEANIPETQLNQVEIGQTVAITSDRDPNLQLTGQIQEIVPTVDRQSRQATLKI HHCCCEEEECCCCHHHCCEEECCCEEEEECCCCCCEEEECCHHHHHHHHCCCCCCEEEEE SLPPGTDLKPGMFLRGNIILAQAQGIGVPTEAVIPQDGDQATVFRVNDDNTVTAVTVELG ECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEHH ELLDDNQIEVLGGLQAGDRLVVKGAPYLKDGDAIEIQPF HHCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEECC >Mature Secondary Structure TQLAPKPDPTDNPAITSQSKRLPWLGLVVGILIGAIATYVGGQFSSSQPEETSSAPTTN CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PNQAPGRAVTTLTLEPQAIAKTMAIVGTVTPAEIVAVTAARSGLQITNLLVDEGDNVQAG CCCCCCCEEEEEEECHHHHHHHHHHHCCCCHHHHHEEHHHCCCCEEEEEEECCCCCCHHH QLLAQLDNATLQAELRQAQAQVAQAQARLAELRAGARSEELARAQEQVNQARAALGRSQA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC DLKLSEQRLQRNQELFEAGAIAADTLDETRTRRDGAAASVSQNQATLREAEQRLQELRRG CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC PRLETLAQAEAQLQQAQAQVSLVTTRLRETQVRAPRPGKILEKFAQLGDLSTANEPLFNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHH LEAGQLELEANIPETQLNQVEIGQTVAITSDRDPNLQLTGQIQEIVPTVDRQSRQATLKI HHCCCEEEECCCCHHHCCEEECCCEEEEECCCCCCEEEECCHHHHHHHHCCCCCCEEEEE SLPPGTDLKPGMFLRGNIILAQAQGIGVPTEAVIPQDGDQATVFRVNDDNTVTAVTVELG ECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEHH ELLDDNQIEVLGGLQAGDRLVVKGAPYLKDGDAIEIQPF HHCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA