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The map label for this gene is rlmI [H]

Identifier: 170077801

GI number: 170077801

Start: 1225840

End: 1227030

Strand: Reverse

Name: rlmI [H]

Synonym: SYNPCC7002_A1184

Alternate gene names: 170077801

Gene position: 1227030-1225840 (Counterclockwise)

Preceding gene: 170077804

Following gene: 170077799

Centisome position: 40.79

GC content: 51.05

Gene sequence:

>1191_bases
ATGGCAAAACTCCGCGAAATCACCGTTTCCCCCCAACTGAAAAAGCATCTCGTGCAAGGTCATCCCTGGATCTATCGCGA
TAAATTGCCGAAGAGTCTCCGCTTTGAAACGGGGGAATGGTTGCGAGTTAAATGTGGCAACTGGACGGGATTCGGCCTTT
GGGATAACAAAAGTCCCATTGCTGTCCGGATTTTTTCCCAACGGCATCTGCCTGACCGTCGCTGGTTACAACAGCAGGTA
CAAACAGCCTGGGATTTACGGGAACCCCTGCGCCAAAGCAATTGCACCGCCTACCGCTGGCTCTTTGGGGAAGGCGATCG
CCTGCCAGGAATTACGGTGGATCTGTATGGGGAATACGCCGTCGTGCAAACTTATATGGAAGCGGCCAATGTACTGCTCG
ATTGGCTCGTGCGATCGCTGCGGGAAGTCGCCCCACTACAGGGAATTTTATGGCGCACCAAACATTTAGAAAATTTAGAA
GATCGCGATACAGACAGCAAAACCCAAGTGCTCTGGGGCAAGGAACCCAAGGGCGATATTACCGTTACTGAACATGGTCT
AGTCTTCCAGGTGAATTTGCAAACGGGCCAAAAAACAGGCCTATTCCTTGATCACCGGGAAAATCGCAAATTTATTGGCG
AAATTAGCCACGATAAAACCGTTCTCAACTGTTTTTCTTACACCGGAGCCTTTTCTCTCTACGCCCTGCGCGGTGGTGCT
AGCCAGGTGACCAATGTCGATGTGGGCAAGCAATTAGCGGAAGTCGCCAACACCAACGTGCGCCTCAATCATTTTGACCC
AGGCAAACATACCTTTGTCACCGCTGACTGCTTTGATGTTCTCAACCGCTACGCCCAAGCAAAACAAACCTTCGATCTTG
TAATCCTCGATCCACCCAGTTTCGCTAAAAGCAAAAAAAATCGGTTTGCCGCCATCCGTGCCTACACCAAACTCAATGCC
CTCGCCCTCCAATGCGTTGCCCCTAATGGATTACTGGTTTCTGCCAGTTGCACCAGCCAAGTCAGCCCCGAAGCCTTCCG
AGAAATGCTTGCCAGTGCCGCTGCCTCGGCTAATTATTACCTGCAAATTATCCACGAGGCCGGACAACCCTGCGATCATC
CGGTGCCAGCCGCTTTTCCAGAGGGACGCTATTTAAAATTTGTTGTTGCGAAGGTCAGCCCCATTATTTAG

Upstream 100 bases:

>100_bases
ATGCCAAACCTTTGATAAGCGACTTTTATCTATATCTTGATGGTGGGCGATCGCCGACGGGAACGATCAATAATAGAAGG
CTGCCCATTCTACGATTCCC

Downstream 100 bases:

>100_bases
CGATTATTTAACTCATGCCTTTGGGTGCAAAATTCCAAACACGGAAGTGTAGCCATGCAAAAAGGTGCGATCGCCGACGG
GGCCAATTTCCCCATTGCAG

Product: putative SAM-dependent methyltransferase

Products: NA

Alternate protein names: 23S rRNA m5C1962 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase RlmI [H]

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAKLREITVSPQLKKHLVQGHPWIYRDKLPKSLRFETGEWLRVKCGNWTGFGLWDNKSPIAVRIFSQRHLPDRRWLQQQV
QTAWDLREPLRQSNCTAYRWLFGEGDRLPGITVDLYGEYAVVQTYMEAANVLLDWLVRSLREVAPLQGILWRTKHLENLE
DRDTDSKTQVLWGKEPKGDITVTEHGLVFQVNLQTGQKTGLFLDHRENRKFIGEISHDKTVLNCFSYTGAFSLYALRGGA
SQVTNVDVGKQLAEVANTNVRLNHFDPGKHTFVTADCFDVLNRYAQAKQTFDLVILDPPSFAKSKKNRFAAIRAYTKLNA
LALQCVAPNGLLVSASCTSQVSPEAFREMLASAAASANYYLQIIHEAGQPCDHPVPAAFPEGRYLKFVVAKVSPII

Sequences:

>Translated_396_residues
MAKLREITVSPQLKKHLVQGHPWIYRDKLPKSLRFETGEWLRVKCGNWTGFGLWDNKSPIAVRIFSQRHLPDRRWLQQQV
QTAWDLREPLRQSNCTAYRWLFGEGDRLPGITVDLYGEYAVVQTYMEAANVLLDWLVRSLREVAPLQGILWRTKHLENLE
DRDTDSKTQVLWGKEPKGDITVTEHGLVFQVNLQTGQKTGLFLDHRENRKFIGEISHDKTVLNCFSYTGAFSLYALRGGA
SQVTNVDVGKQLAEVANTNVRLNHFDPGKHTFVTADCFDVLNRYAQAKQTFDLVILDPPSFAKSKKNRFAAIRAYTKLNA
LALQCVAPNGLLVSASCTSQVSPEAFREMLASAAASANYYLQIIHEAGQPCDHPVPAAFPEGRYLKFVVAKVSPII
>Mature_395_residues
AKLREITVSPQLKKHLVQGHPWIYRDKLPKSLRFETGEWLRVKCGNWTGFGLWDNKSPIAVRIFSQRHLPDRRWLQQQVQ
TAWDLREPLRQSNCTAYRWLFGEGDRLPGITVDLYGEYAVVQTYMEAANVLLDWLVRSLREVAPLQGILWRTKHLENLED
RDTDSKTQVLWGKEPKGDITVTEHGLVFQVNLQTGQKTGLFLDHRENRKFIGEISHDKTVLNCFSYTGAFSLYALRGGAS
QVTNVDVGKQLAEVANTNVRLNHFDPGKHTFVTADCFDVLNRYAQAKQTFDLVILDPPSFAKSKKNRFAAIRAYTKLNAL
ALQCVAPNGLLVSASCTSQVSPEAFREMLASAAASANYYLQIIHEAGQPCDHPVPAAFPEGRYLKFVVAKVSPII

Specific function: Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA [H]

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=386, Percent_Identity=33.160621761658, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1787181, Length=227, Percent_Identity=33.920704845815, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: =2.1.1.191 [H]

Molecular weight: Translated: 44813; Mature: 44682

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLREITVSPQLKKHLVQGHPWIYRDKLPKSLRFETGEWLRVKCGNWTGFGLWDNKSPI
CCCCEEEECCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCE
AVRIFSQRHLPDRRWLQQQVQTAWDLREPLRQSNCTAYRWLFGEGDRLPGITVDLYGEYA
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCHH
VVQTYMEAANVLLDWLVRSLREVAPLQGILWRTKHLENLEDRDTDSKTQVLWGKEPKGDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCE
TVTEHGLVFQVNLQTGQKTGLFLDHRENRKFIGEISHDKTVLNCFSYTGAFSLYALRGGA
EEEECCEEEEEEECCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEECCC
SQVTNVDVGKQLAEVANTNVRLNHFDPGKHTFVTADCFDVLNRYAQAKQTFDLVILDPPS
CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHCCCEEEEEECCCC
FAKSKKNRFAAIRAYTKLNALALQCVAPNGLLVSASCTSQVSPEAFREMLASAAASANYY
HHHHHHHHHEEHHHHHHHCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHH
LQIIHEAGQPCDHPVPAAFPEGRYLKFVVAKVSPII
EEEEHHCCCCCCCCCCCCCCCCCEEEEEEEHHCCCC
>Mature Secondary Structure 
AKLREITVSPQLKKHLVQGHPWIYRDKLPKSLRFETGEWLRVKCGNWTGFGLWDNKSPI
CCCEEEECCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCE
AVRIFSQRHLPDRRWLQQQVQTAWDLREPLRQSNCTAYRWLFGEGDRLPGITVDLYGEYA
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCHH
VVQTYMEAANVLLDWLVRSLREVAPLQGILWRTKHLENLEDRDTDSKTQVLWGKEPKGDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCE
TVTEHGLVFQVNLQTGQKTGLFLDHRENRKFIGEISHDKTVLNCFSYTGAFSLYALRGGA
EEEECCEEEEEEECCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEECCC
SQVTNVDVGKQLAEVANTNVRLNHFDPGKHTFVTADCFDVLNRYAQAKQTFDLVILDPPS
CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHCCCEEEEEECCCC
FAKSKKNRFAAIRAYTKLNALALQCVAPNGLLVSASCTSQVSPEAFREMLASAAASANYY
HHHHHHHHHEEHHHHHHHCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHH
LQIIHEAGQPCDHPVPAAFPEGRYLKFVVAKVSPII
EEEEHHCCCCCCCCCCCCCCCCCEEEEEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA