Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170077804

Identifier: 170077804

GI number: 170077804

Start: 1229660

End: 1230265

Strand: Reverse

Name: 170077804

Synonym: SYNPCC7002_A1187

Alternate gene names: NA

Gene position: 1230265-1229660 (Counterclockwise)

Preceding gene: 170077809

Following gene: 170077801

Centisome position: 40.9

GC content: 50.83

Gene sequence:

>606_bases
TTGGTTTGTCCAAATCTGCTTACTGCCCTTCATGGTGATGTATGCATTGCCCATTCTGGGACTGGTGCCAGCTTTAATTT
CCCAGGCCATCTATCAGCCCAGCAGTTATGGGCGACTTTGGCAAACCCTAACCCAACAGAACTTACCGGAATTGGGGTTT
ACGCTCCTATTGTTTCTAGTTTTGGCGGTTTTGATCGGCTATTGCACCTATATGGCCTGGGATATGGCCCAATCGTTCTA
CCGTACCTGGCATTGCTCTCGATTGCGCAAACGGAAAGAGGAAGGCTACGGAATGGTGCTGTTGTCCCATGGGCTGGTGG
CCGCTTGATTGATAATCTAGGGCGACATAACTGTCTGTGGTTACCGCGCCAGGCGATCGCCGATATTGCTTGGCACCGAA
TGCGCGAAGAAGGAGCAAAACGATCCTATTGGGTGAATCGAACGCGCATTTGCTACGTTTCTGCCAAAGGGAAAAAGCAC
TGGCTCACCCTAGAAGGTCGCATCGTAGATCTGGGGTATTCCAACCATGGACATACCGATGACCGCGCCGATCGTGCTCT
TTATGAAGCCTTAGTGAAATGGTGGAAAGGGCGATCGCCTCAATAA

Upstream 100 bases:

>100_bases
GGCTATATCCCCTGACCGTACTGCCAGAACCCTATCAGACTGCCTTTCGCCAGGGAAGCGCCCACTATCTACCAGGACGA
TTTTTACGCGCACAGACAGA

Downstream 100 bases:

>100_bases
ATACAATCTCAAAGGGAAGGCGATCGCCGTCTTTGTTGCTGGTTCTGGCGAATAATCAAGAATCCCATCGCCAACCAAAA
AATCAACAGCCCGCCCGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MVCPNLLTALHGDVCIAHSGTGASFNFPGHLSAQQLWATLANPNPTELTGIGVYAPIVSSFGGFDRLLHLYGLGYGPIVL
PYLALLSIAQTERGRLRNGAVVPWAGGRLIDNLGRHNCLWLPRQAIADIAWHRMREEGAKRSYWVNRTRICYVSAKGKKH
WLTLEGRIVDLGYSNHGHTDDRADRALYEALVKWWKGRSPQ

Sequences:

>Translated_201_residues
MVCPNLLTALHGDVCIAHSGTGASFNFPGHLSAQQLWATLANPNPTELTGIGVYAPIVSSFGGFDRLLHLYGLGYGPIVL
PYLALLSIAQTERGRLRNGAVVPWAGGRLIDNLGRHNCLWLPRQAIADIAWHRMREEGAKRSYWVNRTRICYVSAKGKKH
WLTLEGRIVDLGYSNHGHTDDRADRALYEALVKWWKGRSPQ
>Mature_201_residues
MVCPNLLTALHGDVCIAHSGTGASFNFPGHLSAQQLWATLANPNPTELTGIGVYAPIVSSFGGFDRLLHLYGLGYGPIVL
PYLALLSIAQTERGRLRNGAVVPWAGGRLIDNLGRHNCLWLPRQAIADIAWHRMREEGAKRSYWVNRTRICYVSAKGKKH
WLTLEGRIVDLGYSNHGHTDDRADRALYEALVKWWKGRSPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22351; Mature: 22351

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCPNLLTALHGDVCIAHSGTGASFNFPGHLSAQQLWATLANPNPTELTGIGVYAPIVSS
CCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECHHHHHHHHC
FGGFDRLLHLYGLGYGPIVLPYLALLSIAQTERGRLRNGAVVPWAGGRLIDNLGRHNCLW
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHCCCCCEEE
LPRQAIADIAWHRMREEGAKRSYWVNRTRICYVSAKGKKHWLTLEGRIVDLGYSNHGHTD
CCHHHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCEEEEEEECEEEEECCCCCCCCC
DRADRALYEALVKWWKGRSPQ
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVCPNLLTALHGDVCIAHSGTGASFNFPGHLSAQQLWATLANPNPTELTGIGVYAPIVSS
CCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECHHHHHHHHC
FGGFDRLLHLYGLGYGPIVLPYLALLSIAQTERGRLRNGAVVPWAGGRLIDNLGRHNCLW
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHCCCCCEEE
LPRQAIADIAWHRMREEGAKRSYWVNRTRICYVSAKGKKHWLTLEGRIVDLGYSNHGHTD
CCHHHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCEEEEEEECEEEEECCCCCCCCC
DRADRALYEALVKWWKGRSPQ
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA