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The map label for this gene is sdhB [H]

Identifier: 170077714

GI number: 170077714

Start: 1123904

End: 1124905

Strand: Reverse

Name: sdhB [H]

Synonym: SYNPCC7002_A1094

Alternate gene names: 170077714

Gene position: 1124905-1123904 (Counterclockwise)

Preceding gene: 170077717

Following gene: 170077713

Centisome position: 37.4

GC content: 51.7

Gene sequence:

>1002_bases
ATGGACATCGCCTTCAATATTTTGCGCCAACGGCAACGAAACGTCGCACCAGAATTTTTCACTTATCAGCTTTCTGTGCC
AGAAAGTACAACAATTTTAGATTGTCTAAATCAGATCAAATGGCAGCAGGATGGCAGTTTAGCTTTTCGCAAAAATTGTC
GCAATACCATCTGTGGGAGTTGTGCCATGGGGATTAATGGCCGGGCGGCCTTGGCCTGTAAAGAAAATGTGCGCCAAGAA
ATTACCCGTCTACAAGGCACCGATTCTGATCCTGGAGCCATTCCCAAAATTACGATTACCCCCCTGAATAATTTTCCGGT
GATTAAGGATTTGGTGGTAGATATGACCACCTTTTGGCAACAGCTAGAAGCGGTAGTTCCCTATGTCCAAAGGCGATCGC
CCCAGGTTCCCGAAACAGAATTTCGTCAGTCTCCCCAGGAGCGCGAAGCCCTCAACCAAGCCGGCAACTGCATCCTGTGT
GGCGCTTGCTACGCCGAATGCAATGCCGTCACTGTCAACCCCGAATTTTTAGGCCCCCACGCCCTCGCCAAGGGAGAACG
GCTGCTCAAGGATTCCCGGGATGATACGACTTCCGCCAGGCTAGATCACTACCACCAACCAGCAGTCGGCGTCTGGGCCT
GCACCCGCTGTTATCAATGCAACTATGTCTGTCCCCAGGAAGTTGACCCCCTCGACCGCATTACCCAAATCAAAAGTACC
CTCCTCCAGCAAAAAGATCCCGCTGAAAGTCGTGCAGTACGCCACCGGAAAACTCTCCTTCACCTGGTGCAAGCAGGGGG
ATGGATCGATGAACGGCGTTTTGCCTTGATGGTGATCGGACTCCAGAGCGTTGGTGAGATTTTTCCGTTGGGTTGGCGGA
TGCTGTGGCATGGCAAATTTCCCGTGACCTTCGAAGCTTCAGAAGGTACCGCAGCCGTGGCAGATCTGATGGCCCAGGTA
ATGGCTTCCAAGCAGGGAAGTCAAGATTATCCAGTAAAATGA

Upstream 100 bases:

>100_bases
GCGCTGATTATTTGTTAACTTTATCGACAATGGTTTTAACTGCCGAATTCATCCCGATAGACTAGGAAGGGAAGAAATTT
GTGGCAAAAAGAGGTTGGCC

Downstream 100 bases:

>100_bases
GGGGGCTTAAATTAAATAAATTTTCTACAAAAAACGTTTATGGCAGCACAGGTGACAACTTCAACGGATAAAGTTTTGCG
GCAGCCGATCCTCGGCTCTC

Product: succinate dehydrogenase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDIAFNILRQRQRNVAPEFFTYQLSVPESTTILDCLNQIKWQQDGSLAFRKNCRNTICGSCAMGINGRAALACKENVRQE
ITRLQGTDSDPGAIPKITITPLNNFPVIKDLVVDMTTFWQQLEAVVPYVQRRSPQVPETEFRQSPQEREALNQAGNCILC
GACYAECNAVTVNPEFLGPHALAKGERLLKDSRDDTTSARLDHYHQPAVGVWACTRCYQCNYVCPQEVDPLDRITQIKST
LLQQKDPAESRAVRHRKTLLHLVQAGGWIDERRFALMVIGLQSVGEIFPLGWRMLWHGKFPVTFEASEGTAAVADLMAQV
MASKQGSQDYPVK

Sequences:

>Translated_333_residues
MDIAFNILRQRQRNVAPEFFTYQLSVPESTTILDCLNQIKWQQDGSLAFRKNCRNTICGSCAMGINGRAALACKENVRQE
ITRLQGTDSDPGAIPKITITPLNNFPVIKDLVVDMTTFWQQLEAVVPYVQRRSPQVPETEFRQSPQEREALNQAGNCILC
GACYAECNAVTVNPEFLGPHALAKGERLLKDSRDDTTSARLDHYHQPAVGVWACTRCYQCNYVCPQEVDPLDRITQIKST
LLQQKDPAESRAVRHRKTLLHLVQAGGWIDERRFALMVIGLQSVGEIFPLGWRMLWHGKFPVTFEASEGTAAVADLMAQV
MASKQGSQDYPVK
>Mature_333_residues
MDIAFNILRQRQRNVAPEFFTYQLSVPESTTILDCLNQIKWQQDGSLAFRKNCRNTICGSCAMGINGRAALACKENVRQE
ITRLQGTDSDPGAIPKITITPLNNFPVIKDLVVDMTTFWQQLEAVVPYVQRRSPQVPETEFRQSPQEREALNQAGNCILC
GACYAECNAVTVNPEFLGPHALAKGERLLKDSRDDTTSARLDHYHQPAVGVWACTRCYQCNYVCPQEVDPLDRITQIKST
LLQQKDPAESRAVRHRKTLLHLVQAGGWIDERRFALMVIGLQSVGEIFPLGWRMLWHGKFPVTFEASEGTAAVADLMAQV
MASKQGSQDYPVK

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI115387094, Length=237, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=4e-32,
Organism=Escherichia coli, GI1786943, Length=249, Percent_Identity=38.5542168674699, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1790596, Length=225, Percent_Identity=37.3333333333333, Blast_Score=145, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17533915, Length=214, Percent_Identity=37.3831775700935, Blast_Score=135, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6322987, Length=230, Percent_Identity=35.2173913043478, Blast_Score=137, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24643156, Length=236, Percent_Identity=33.4745762711864, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI17137106, Length=244, Percent_Identity=32.3770491803279, Blast_Score=129, Evalue=3e-30,

Paralogues:

None

Copy number: 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 37384; Mature: 37384

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAFNILRQRQRNVAPEFFTYQLSVPESTTILDCLNQIKWQQDGSLAFRKNCRNTICGS
CCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
CAMGINGRAALACKENVRQEITRLQGTDSDPGAIPKITITPLNNFPVIKDLVVDMTTFWQ
HHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
QLEAVVPYVQRRSPQVPETEFRQSPQEREALNQAGNCILCGACYAECNAVTVNPEFLGPH
HHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCEEEEECHHHCCCEEEECHHHCCCH
ALAKGERLLKDSRDDTTSARLDHYHQPAVGVWACTRCYQCNYVCPQEVDPLDRITQIKST
HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LLQQKDPAESRAVRHRKTLLHLVQAGGWIDERRFALMVIGLQSVGEIFPLGWRMLWHGKF
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHCCCEEEEEECCC
PVTFEASEGTAAVADLMAQVMASKQGSQDYPVK
CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDIAFNILRQRQRNVAPEFFTYQLSVPESTTILDCLNQIKWQQDGSLAFRKNCRNTICGS
CCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
CAMGINGRAALACKENVRQEITRLQGTDSDPGAIPKITITPLNNFPVIKDLVVDMTTFWQ
HHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
QLEAVVPYVQRRSPQVPETEFRQSPQEREALNQAGNCILCGACYAECNAVTVNPEFLGPH
HHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCEEEEECHHHCCCEEEECHHHCCCH
ALAKGERLLKDSRDDTTSARLDHYHQPAVGVWACTRCYQCNYVCPQEVDPLDRITQIKST
HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LLQQKDPAESRAVRHRKTLLHLVQAGGWIDERRFALMVIGLQSVGEIFPLGWRMLWHGKF
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHCCCEEEEEECCC
PVTFEASEGTAAVADLMAQVMASKQGSQDYPVK
CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]