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The map label for this gene is ycf4

Identifier: 170077713

GI number: 170077713

Start: 1123298

End: 1123864

Strand: Reverse

Name: ycf4

Synonym: SYNPCC7002_A1093

Alternate gene names: 170077713

Gene position: 1123864-1123298 (Counterclockwise)

Preceding gene: 170077714

Following gene: 170077712

Centisome position: 37.36

GC content: 47.8

Gene sequence:

>567_bases
ATGGCAGCACAGGTGACAACTTCAACGGATAAAGTTTTGCGGCAGCCGATCCTCGGCTCTCGTCGTTTTAGTAATATGCT
TTGGGCCAGTGTTTCTGCCATTGGTGGCATTGGTTTTCTGTTAGCTGGTCTTTCGAGTTATTTTCACAAAAATCTGCTGG
GGGTGAGTGACCCCAGTAATATCCAATTCATTCCCCAAGGGGCTGCCTTAACGTTCTATGGCGTTGCCGGAACGCTATTG
TCTGCCTATCTCTGGTTTGTATTTTTCCTTGATGTGGGCGGTGGTTACAACGAATTTAATAAAGAAACGGGCAAGGTGAC
TATTTTCCGGAATGGCTTTGTGGGCAAAAACCGGATTATTAATTTCCAGTATCCCCTCAAGGATATTTTGTCAATTCGAG
CAGAGATCAAAGAGGGTCTAAACCCCCGGCGAGTGCTTTATCTCCGGGTAAAAAATCGGGGTGATATTCCCCTCAACCGA
GTCGGAGAGCCGATTCCCCTTGCGGAACTGGAGAATCAAGGGGCTGAGTTGGCCCGCTTTTTAACCATTCCCCTGGAAGG
TCTCTAG

Upstream 100 bases:

>100_bases
AGATCTGATGGCCCAGGTAATGGCTTCCAAGCAGGGAAGTCAAGATTATCCAGTAAAATGAGGGGGCTTAAATTAAATAA
ATTTTCTACAAAAAACGTTT

Downstream 100 bases:

>100_bases
ATCTTTCTAAGCACCTGAGACGAAAAAAAGACAGTGGGCGATCGCCTTCGCTGCTTCCTATAATTTTTCCAGGTTTTATC
TAAAACAAAAGTACGACTAA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAAQVTTSTDKVLRQPILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSNIQFIPQGAALTFYGVAGTLL
SAYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGKNRIINFQYPLKDILSIRAEIKEGLNPRRVLYLRVKNRGDIPLNR
VGEPIPLAELENQGAELARFLTIPLEGL

Sequences:

>Translated_188_residues
MAAQVTTSTDKVLRQPILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSNIQFIPQGAALTFYGVAGTLL
SAYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGKNRIINFQYPLKDILSIRAEIKEGLNPRRVLYLRVKNRGDIPLNR
VGEPIPLAELENQGAELARFLTIPLEGL
>Mature_187_residues
AAQVTTSTDKVLRQPILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSNIQFIPQGAALTFYGVAGTLLS
AYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGKNRIINFQYPLKDILSIRAEIKEGLNPRRVLYLRVKNRGDIPLNRV
GEPIPLAELENQGAELARFLTIPLEGL

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF4_SYNP2 (O68611)

Other databases:

- EMBL:   AF052290
- EMBL:   CP000951
- RefSeq:   YP_001734351.1
- GeneID:   6056629
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1093
- HOGENOM:   HBG439339
- OMA:   LTRVGQP
- ProtClustDB:   PRK02542
- GO:   GO:0015979
- HAMAP:   MF_00437
- InterPro:   IPR003359
- ProDom:   PD003698

Pfam domain/function: PF02392 Ycf4

EC number: NA

Molecular weight: Translated: 20766; Mature: 20635

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1bf95410)-; HASH(0x1b300d9c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQVTTSTDKVLRQPILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSN
CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IQFIPQGAALTFYGVAGTLLSAYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGKNRII
EEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEE
NFQYPLKDILSIRAEIKEGLNPRRVLYLRVKNRGDIPLNRVGEPIPLAELENQGAELARF
EEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCHHHHHCCHHHHHHH
LTIPLEGL
HCCCCCCH
>Mature Secondary Structure 
AAQVTTSTDKVLRQPILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSN
CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IQFIPQGAALTFYGVAGTLLSAYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGKNRII
EEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEE
NFQYPLKDILSIRAEIKEGLNPRRVLYLRVKNRGDIPLNRVGEPIPLAELENQGAELARF
EEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCHHHHHCCHHHHHHH
LTIPLEGL
HCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA