| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is hypF [H]
Identifier: 170076835
GI number: 170076835
Start: 213526
End: 215802
Strand: Direct
Name: hypF [H]
Synonym: SYNPCC7002_A0204
Alternate gene names: 170076835
Gene position: 213526-215802 (Clockwise)
Preceding gene: 170076834
Following gene: 170076836
Centisome position: 7.1
GC content: 40.97
Gene sequence:
>2277_bases TTGGAGATTCAAGGCACAGTGCAGGGGGTTGGTTTTCGTCCTTTTGTTTACCAATTAGCGACAGCACTCAATTTATTTGG TTGGGTGAATAACTCTACTGCGGGGGTTACTATTGAAGTAGAAGGTGGGCGATCGCCATTAAATTTATTTCTCGAAAAAC TGCAAGCAGAATTGCCCCCTAATGCAAAGATTGACGCTTTAAAATATCAATATTTAGAGCTAATTGGGTATAATAATTTT GAAATTCATGCGAGTCAAACTGGGGAAAAAATAGCGATTGTTTTGCCCGATTTGGCGACCTGTTCTGAATGCATTGCAGA AATTTTTGACCCCCAAAATCGCCGTTATCAATACCCCTTTACCAACTGCACCCATTGCGGCCCCCGCTACAGCATTATTG AAACCCTGCCCTACGATCGCTCCCTAACGTCAATGGCAGATTTTTCGATGTGTGCCGACTGTCAACGGGAATATGAAGAC CCCGGCGATCGCCGTTTCCATGCCCAACCCAATGCCTGCCCAATTTGTGGCCCTAAACTTGAATTTTTGAGTCATTGCCA AGGGCAAGAAAATACAAATCAATCACCTTTAGAGGCAGCAATTCAATATATTCGTGATGGAAAAATTGTCGCCCTAAAAG GCTTAGGCGGATTTCAGTTATTAGTCGATGCCAGAAATAACAAAGCAGTGCAACAATTGCGTGGACGGAAACAACGTCCT GATAAACCTTTTGCGGTGATGTATCCTGATTTGCCGTCCATTAAAAATGATTGTTTTTTGTCACAATTAGAAGAAGCATT TTTGACTTCCCAAGCCAGTCCGACTGTTTTATTACAGAAGAAAAAAGAATTTAATCTTGCTGAAAATGTTGCGCCGCACA ATCCGAATTTAGGAGTAATGTTGCCCTATACTCCGCTACACCATTTATTATTAAAAAGCCTGAATTTTCCAGTCATTGCA ACTAGTGGTAACCGCAGTGATGAACCCATTTGCATTGATGAAACTGAAGCGCTAGAGAGGCTCAAAAATATTGCCGATGG CTTTTTAATTCATAATCGCCGAATTTTGCGTCCGGTGGATGATTCAGTGGTGCGGGTGATGAACAATACGCCTATAATTT TGAGGCGATCGCGGGGCTATGCGCCAGAGCCACTCACCTTAAAACGAACGCTCTCGAAAAATGTTTTGGCAATGGGGGCA CATCTAAAAAATACGGTGGCGATCGCCCAAAAAAATCGTCTTTTTCTAAGTCAGCATATTGGTGATCTATCCAATCAATT AACACTGCAAGCGATGACAAAAACATTGCAAAAACTAAGCCAAATTTATGACTTTCAACCTGATATTATTGCCTGTGATT TACATCCCGATTATCTCTCTACACAATATGCTAAAAATCTCGCGCAGAAACTGAATATTTCTTTGATTTCAGTGCAGCAT CACCATGCCCATATATATGCTTGTATGGCGGAACATCAGCTTGAATCGCCGCTGTTAGGGGTGGCTTGGGATGGGACGGG CTACGGTGAAGATGGCACAATTTGGGGCGGTGAGTTTTTCTGGGTGACAAAACAGAGTTGTGAAAGAATTGCCCACTTTA AACCGTTTCCGTTACCGGGTGGGGATCGAGCGAGTCGAGAACCCCGTCGCAGTGCTTTAGGTTTGTTGTCTCAACTCTAT GATTTACAGGTATTGAAAAAGTTAAATTTACCCACAATTCAGGCTTTTTCTGCAACAGAATTGGAATTGCTTTTATCAAT GTTAAAAAAAGACATTAATACGCCATTCACTTCTAGTGTTGGACGCTTATTTGATGGGGTTGCCTCTCTGCTTGATTTAA GGCAAAGGGAAAGTTTTGAAGGACAGGCAGCGATGGCTTTAGAATTTTCAATTGATGGTTTACAAATACCAGATTTTTAT CAGTTTCAATATACAAAAAATGATTCAATCTTAGAGATTGATAGTCGTGGTATATTTCAGGGTATTATTCAGGATTTGCA AAATGACTTGCCTAAAAATTTTATTGCGGCAAAATTTCACAATACCTTGGTGGAAATTATTTTTGATATTTATCTGCATA CCCTTAAGCTTGGTTTTAATTCTCGAAAAAATATTGTCTTAGCGGGGGGCTGTTTTCAGAATAAATATTTATTAGAGCAA ACGATCCAAAAGTTGGAATCTAGTGGGGCAAATATCTATTATCCCCAAAAATTCCCGCCCAATGATGGGGCGATCGCCTT GGGACAGGTTATGGTGGTTACTGGACAAGCGATCTAA
Upstream 100 bases:
>100_bases GGGATGGAAAGCTGGTTGAATTATCTCCAAAGCCAATACCAAGACATTGCTTTCCAAGCTGTAATAACTGTATAAATTGC TCGTGAAAAGACGGTTAAGA
Downstream 100 bases:
>100_bases TTTTTTGCTGTTGGGAAATCATCCAGAAGAGTCTCAACAAAAAGCTTAATAAAAAAACTTAAAACTAATAACATCAAAGC AAAAAATTCGTTAGGATAAA
Product: [NiFe] hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 758; Mature: 758
Protein sequence:
>758_residues MEIQGTVQGVGFRPFVYQLATALNLFGWVNNSTAGVTIEVEGGRSPLNLFLEKLQAELPPNAKIDALKYQYLELIGYNNF EIHASQTGEKIAIVLPDLATCSECIAEIFDPQNRRYQYPFTNCTHCGPRYSIIETLPYDRSLTSMADFSMCADCQREYED PGDRRFHAQPNACPICGPKLEFLSHCQGQENTNQSPLEAAIQYIRDGKIVALKGLGGFQLLVDARNNKAVQQLRGRKQRP DKPFAVMYPDLPSIKNDCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVMLPYTPLHHLLLKSLNFPVIA TSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDDSVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNVLAMGA HLKNTVAIAQKNRLFLSQHIGDLSNQLTLQAMTKTLQKLSQIYDFQPDIIACDLHPDYLSTQYAKNLAQKLNISLISVQH HHAHIYACMAEHQLESPLLGVAWDGTGYGEDGTIWGGEFFWVTKQSCERIAHFKPFPLPGGDRASREPRRSALGLLSQLY DLQVLKKLNLPTIQAFSATELELLLSMLKKDINTPFTSSVGRLFDGVASLLDLRQRESFEGQAAMALEFSIDGLQIPDFY QFQYTKNDSILEIDSRGIFQGIIQDLQNDLPKNFIAAKFHNTLVEIIFDIYLHTLKLGFNSRKNIVLAGGCFQNKYLLEQ TIQKLESSGANIYYPQKFPPNDGAIALGQVMVVTGQAI
Sequences:
>Translated_758_residues MEIQGTVQGVGFRPFVYQLATALNLFGWVNNSTAGVTIEVEGGRSPLNLFLEKLQAELPPNAKIDALKYQYLELIGYNNF EIHASQTGEKIAIVLPDLATCSECIAEIFDPQNRRYQYPFTNCTHCGPRYSIIETLPYDRSLTSMADFSMCADCQREYED PGDRRFHAQPNACPICGPKLEFLSHCQGQENTNQSPLEAAIQYIRDGKIVALKGLGGFQLLVDARNNKAVQQLRGRKQRP DKPFAVMYPDLPSIKNDCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVMLPYTPLHHLLLKSLNFPVIA TSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDDSVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNVLAMGA HLKNTVAIAQKNRLFLSQHIGDLSNQLTLQAMTKTLQKLSQIYDFQPDIIACDLHPDYLSTQYAKNLAQKLNISLISVQH HHAHIYACMAEHQLESPLLGVAWDGTGYGEDGTIWGGEFFWVTKQSCERIAHFKPFPLPGGDRASREPRRSALGLLSQLY DLQVLKKLNLPTIQAFSATELELLLSMLKKDINTPFTSSVGRLFDGVASLLDLRQRESFEGQAAMALEFSIDGLQIPDFY QFQYTKNDSILEIDSRGIFQGIIQDLQNDLPKNFIAAKFHNTLVEIIFDIYLHTLKLGFNSRKNIVLAGGCFQNKYLLEQ TIQKLESSGANIYYPQKFPPNDGAIALGQVMVVTGQAI >Mature_758_residues MEIQGTVQGVGFRPFVYQLATALNLFGWVNNSTAGVTIEVEGGRSPLNLFLEKLQAELPPNAKIDALKYQYLELIGYNNF EIHASQTGEKIAIVLPDLATCSECIAEIFDPQNRRYQYPFTNCTHCGPRYSIIETLPYDRSLTSMADFSMCADCQREYED PGDRRFHAQPNACPICGPKLEFLSHCQGQENTNQSPLEAAIQYIRDGKIVALKGLGGFQLLVDARNNKAVQQLRGRKQRP DKPFAVMYPDLPSIKNDCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVMLPYTPLHHLLLKSLNFPVIA TSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDDSVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNVLAMGA HLKNTVAIAQKNRLFLSQHIGDLSNQLTLQAMTKTLQKLSQIYDFQPDIIACDLHPDYLSTQYAKNLAQKLNISLISVQH HHAHIYACMAEHQLESPLLGVAWDGTGYGEDGTIWGGEFFWVTKQSCERIAHFKPFPLPGGDRASREPRRSALGLLSQLY DLQVLKKLNLPTIQAFSATELELLLSMLKKDINTPFTSSVGRLFDGVASLLDLRQRESFEGQAAMALEFSIDGLQIPDFY QFQYTKNDSILEIDSRGIFQGIIQDLQNDLPKNFIAAKFHNTLVEIIFDIYLHTLKLGFNSRKNIVLAGGCFQNKYLLEQ TIQKLESSGANIYYPQKFPPNDGAIALGQVMVVTGQAI
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=769, Percent_Identity=39.7919375812744, Blast_Score=463, Evalue=1e-131,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85006; Mature: 85006
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS00290 IG_MHC ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIQGTVQGVGFRPFVYQLATALNLFGWVNNSTAGVTIEVEGGRSPLNLFLEKLQAELPP CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC NAKIDALKYQYLELIGYNNFEIHASQTGEKIAIVLPDLATCSECIAEIFDPQNRRYQYPF CCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCC TNCTHCGPRYSIIETLPYDRSLTSMADFSMCADCQREYEDPGDRRFHAQPNACPICGPKL CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHH EFLSHCQGQENTNQSPLEAAIQYIRDGKIVALKGLGGFQLLVDARNNKAVQQLRGRKQRP HHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCC DKPFAVMYPDLPSIKNDCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVM CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHCCCCCCCCCEEE LPYTPLHHLLLKSLNFPVIATSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVD ECCHHHHHHHHHHCCCCEEEECCCCCCCCEEECHHHHHHHHHHHHCCEEEECCEECCCCC DSVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNVLAMGAHLKNTVAIAQKNRLFLSQHI HHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHEEEHHCCCHHHHHHH GDLSNQLTLQAMTKTLQKLSQIYDFQPDIIACDLHPDYLSTQYAKNLAQKLNISLISVQH HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEEEEC HHAHIYACMAEHQLESPLLGVAWDGTGYGEDGTIWGGEFFWVTKQSCERIAHFKPFPLPG CCCEEEEEHHHHHCCCCCEEEEECCCCCCCCCCEECCEEEEEEHHHHHHHHCCCCCCCCC GDRASREPRRSALGLLSQLYDLQVLKKLNLPTIQAFSATELELLLSMLKKDINTPFTSSV CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCCHHHHH GRLFDGVASLLDLRQRESFEGQAAMALEFSIDGLQIPDFYQFQYTKNDSILEIDSRGIFQ HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCEEEEEECCCCEEEECCCHHHH GIIQDLQNDLPKNFIAAKFHNTLVEIIFDIYLHTLKLGFNSRKNIVLAGGCFQNKYLLEQ HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH TIQKLESSGANIYYPQKFPPNDGAIALGQVMVVTGQAI HHHHHHCCCCEEEECCCCCCCCCCEEECEEEEEECCCC >Mature Secondary Structure MEIQGTVQGVGFRPFVYQLATALNLFGWVNNSTAGVTIEVEGGRSPLNLFLEKLQAELPP CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC NAKIDALKYQYLELIGYNNFEIHASQTGEKIAIVLPDLATCSECIAEIFDPQNRRYQYPF CCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCC TNCTHCGPRYSIIETLPYDRSLTSMADFSMCADCQREYEDPGDRRFHAQPNACPICGPKL CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHH EFLSHCQGQENTNQSPLEAAIQYIRDGKIVALKGLGGFQLLVDARNNKAVQQLRGRKQRP HHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCC DKPFAVMYPDLPSIKNDCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVM CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHCCCCCCCCCEEE LPYTPLHHLLLKSLNFPVIATSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVD ECCHHHHHHHHHHCCCCEEEECCCCCCCCEEECHHHHHHHHHHHHCCEEEECCEECCCCC DSVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNVLAMGAHLKNTVAIAQKNRLFLSQHI HHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHEEEHHCCCHHHHHHH GDLSNQLTLQAMTKTLQKLSQIYDFQPDIIACDLHPDYLSTQYAKNLAQKLNISLISVQH HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEEEEC HHAHIYACMAEHQLESPLLGVAWDGTGYGEDGTIWGGEFFWVTKQSCERIAHFKPFPLPG CCCEEEEEHHHHHCCCCCEEEEECCCCCCCCCCEECCEEEEEEHHHHHHHHCCCCCCCCC GDRASREPRRSALGLLSQLYDLQVLKKLNLPTIQAFSATELELLLSMLKKDINTPFTSSV CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCCHHHHH GRLFDGVASLLDLRQRESFEGQAAMALEFSIDGLQIPDFYQFQYTKNDSILEIDSRGIFQ HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCEEEEEECCCCEEEECCCHHHH GIIQDLQNDLPKNFIAAKFHNTLVEIIFDIYLHTLKLGFNSRKNIVLAGGCFQNKYLLEQ HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH TIQKLESSGANIYYPQKFPPNDGAIALGQVMVVTGQAI HHHHHHCCCCEEEECCCCCCCCCCEEECEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]