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The map label for this gene is hypB [H]

Identifier: 170076834

GI number: 170076834

Start: 212679

End: 213500

Strand: Direct

Name: hypB [H]

Synonym: SYNPCC7002_A0203

Alternate gene names: 170076834

Gene position: 212679-213500 (Clockwise)

Preceding gene: 170076833

Following gene: 170076835

Centisome position: 7.07

GC content: 41.36

Gene sequence:

>822_bases
ATGTGTGGAAATTGCGGTTGTAACGCTGTTGAAAAACCTGTGGAAATTCATACCCACGCCCATGATCATTCCCACGGGCA
TCATGACCATCATCACCCCCATGACCATGAACATCACCATCACCATAATCATGATGGGAACCATAGCCATGCCATTGATA
TTAATCAATCTATTTTTGCAAAAAATGATCGTCTAGCTGAGCGTAATCGCGGCTATTTTTTGGCGAAAGATTTATTTGTT
ATTAATGTCGTTTCAAGTCCCGGCTCAGGGAAAACGGCATTATTAGAACGCACCATTGAGCAATTAAAAAATAAACTGAA
TTCAGCCGTTATCGTGGGCGATTTAAAAACGGATAACGATGCCCAACGGCTGCGAAAAAATAATATTCCGGTTGCCCAAA
TTACCACAGGAACTCTTTGTCATCTCGATGCCGAAATGGTCTTAAATGCCGCCCGAAAACTTGCCCTTGATGGTGTTCAT
TTATTAATCATTGAAAATGTAGGCAATTTAGTTTGTCCCGCTGCCTATGACCTTGGTGAACATAAAAGGATTGTCTTACT
GTCTACCACCGAAGGGGAAGATAAACCCTTAAAATATCCGACGATGTTTAAGTCTGCTGATGTCGTCATTATTAACAAAA
TTGATATCGCTGAAGTTGTTGGTTTTGACCGTGATTCAGCCTTAGAAAACGTCAAGAAAATGTGTCCCCAAGCACAAATT
TTTGAGCTGTCTGCCCGCACGGGGGAAGGGATGGAAAGCTGGTTGAATTATCTCCAAAGCCAATACCAAGACATTGCTTT
CCAAGCTGTAATAACTGTATAA

Upstream 100 bases:

>100_bases
CCCTGATTTATTTTATGAATGTCCGTTATGTAGTAGTTTAAGTCAACATATTTTAAGTGGTAAAGAAGTCGAATTAAAAT
CCTTAGAGGTGATTTAAATT

Downstream 100 bases:

>100_bases
ATTGCTCGTGAAAAGACGGTTAAGATTGGAGATTCAAGGCACAGTGCAGGGGGTTGGTTTTCGTCCTTTTGTTTACCAAT
TAGCGACAGCACTCAATTTA

Product: hydrogenase isoenzymes formation protein; HypB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MCGNCGCNAVEKPVEIHTHAHDHSHGHHDHHHPHDHEHHHHHNHDGNHSHAIDINQSIFAKNDRLAERNRGYFLAKDLFV
INVVSSPGSGKTALLERTIEQLKNKLNSAVIVGDLKTDNDAQRLRKNNIPVAQITTGTLCHLDAEMVLNAARKLALDGVH
LLIIENVGNLVCPAAYDLGEHKRIVLLSTTEGEDKPLKYPTMFKSADVVIINKIDIAEVVGFDRDSALENVKKMCPQAQI
FELSARTGEGMESWLNYLQSQYQDIAFQAVITV

Sequences:

>Translated_273_residues
MCGNCGCNAVEKPVEIHTHAHDHSHGHHDHHHPHDHEHHHHHNHDGNHSHAIDINQSIFAKNDRLAERNRGYFLAKDLFV
INVVSSPGSGKTALLERTIEQLKNKLNSAVIVGDLKTDNDAQRLRKNNIPVAQITTGTLCHLDAEMVLNAARKLALDGVH
LLIIENVGNLVCPAAYDLGEHKRIVLLSTTEGEDKPLKYPTMFKSADVVIINKIDIAEVVGFDRDSALENVKKMCPQAQI
FELSARTGEGMESWLNYLQSQYQDIAFQAVITV
>Mature_273_residues
MCGNCGCNAVEKPVEIHTHAHDHSHGHHDHHHPHDHEHHHHHNHDGNHSHAIDINQSIFAKNDRLAERNRGYFLAKDLFV
INVVSSPGSGKTALLERTIEQLKNKLNSAVIVGDLKTDNDAQRLRKNNIPVAQITTGTLCHLDAEMVLNAARKLALDGVH
LLIIENVGNLVCPAAYDLGEHKRIVLLSTTEGEDKPLKYPTMFKSADVVIINKIDIAEVVGFDRDSALENVKKMCPQAQI
FELSARTGEGMESWLNYLQSQYQDIAFQAVITV

Specific function: Could be involved in nickel binding and accumulation [H]

COG id: COG0378

COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypB/hupM family [H]

Homologues:

Organism=Escherichia coli, GI1789082, Length=229, Percent_Identity=46.7248908296943, Blast_Score=228, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR004392
- InterPro:   IPR012202 [H]

Pfam domain/function: PF02492 cobW [H]

EC number: NA

Molecular weight: Translated: 30426; Mature: 30426

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGNCGCNAVEKPVEIHTHAHDHSHGHHDHHHPHDHEHHHHHNHDGNHSHAIDINQSIFA
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHH
KNDRLAERNRGYFLAKDLFVINVVSSPGSGKTALLERTIEQLKNKLNSAVIVGDLKTDND
CCCHHHHCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCH
AQRLRKNNIPVAQITTGTLCHLDAEMVLNAARKLALDGVHLLIIENVGNLVCPAAYDLGE
HHHHHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCEECCCCCCCCC
HKRIVLLSTTEGEDKPLKYPTMFKSADVVIINKIDIAEVVGFDRDSALENVKKMCPQAQI
CCEEEEEEECCCCCCCCCCCHHCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHCCCCEE
FELSARTGEGMESWLNYLQSQYQDIAFQAVITV
EEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEC
>Mature Secondary Structure
MCGNCGCNAVEKPVEIHTHAHDHSHGHHDHHHPHDHEHHHHHNHDGNHSHAIDINQSIFA
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHH
KNDRLAERNRGYFLAKDLFVINVVSSPGSGKTALLERTIEQLKNKLNSAVIVGDLKTDND
CCCHHHHCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCH
AQRLRKNNIPVAQITTGTLCHLDAEMVLNAARKLALDGVHLLIIENVGNLVCPAAYDLGE
HHHHHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCEECCCCCCCCC
HKRIVLLSTTEGEDKPLKYPTMFKSADVVIINKIDIAEVVGFDRDSALENVKKMCPQAQI
CCEEEEEEECCCCCCCCCCCHHCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHCCCCEE
FELSARTGEGMESWLNYLQSQYQDIAFQAVITV
EEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]