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The map label for this gene is ycdB [H]

Identifier: 170024589

GI number: 170024589

Start: 2598055

End: 2599359

Strand: Reverse

Name: ycdB [H]

Synonym: YPK_2364

Alternate gene names: 170024589

Gene position: 2599359-2598055 (Counterclockwise)

Preceding gene: 170024590

Following gene: 170024587

Centisome position: 55.43

GC content: 49.04

Gene sequence:

>1305_bases
ATGAGAGACAAAACCGGCCCGAAATTCGGGCCGTATCAACCGGATGATGAGGCGGTGTCGCCGTCACGTCGGCGCTTAAT
TTTAGGTATGGGCATGGTGAGTGGCGCTCTGGTATTGGGCGGGGCGAAAATTGCCCAAGCTGCAGATTGTCCAACACCTG
ATGTCGCTGCAACCCAAGATGAGCGTTGGCAAAAACAGCCGTTTTATGGTCAACATCAAGCGGGGGTGTTAACGCCTCAA
CAAGCGGCAATGATGTTGGTGGCTTTTGATGTACTGGCTACCGATAAAACGTCATTAATTAGGTTATTCAAATTACTGAC
CGAACGGCTGGCCTTTCTAACAACTGGCGGGCGGGCACCATCAGTGAATGCCAAACTGCCGCCACTAGATTCGGGGATCA
TGGGACCTGAAATTTATCCTGATAATCTGACCGTTACTGTTTCTGTCGGTGATGCATTATTTGATGAGCGTTTTGGTTTA
CAGGGGCAGAAACCGCTGCGACTACAGCGAATGACCCGCTTTCCTAATGACTCTTTGGATGCGGGGCTATGTCATGGTGA
TGTGATGTTGCAAATTTGTGCTAATACCAATGAAACGGTGATCCATGCGCTGCGCGATATTATTAAGCACACACCCGATC
TACTCAGTGTCCGCTGGAAGCGTGAGGGGTTTATTTCTGCCCATGCTGCTCGCAGTAAAGGTCAGGAGACGCCCATTAAT
TTATTGGGTTTTAAAGACGGGACAGCGAATCCAAAAATCAGTAATAAACCGCTGATCAATAATGTGGTCTGGGTATCAAA
TAATGCAGGCGAGCCTGCATGGGCGGTAGGGGGAAGCTATCAGGTGGTGCGGATAATCCGTTTCAAAGTGGAGTTCTGGG
ATCGCACACCGTTGCAAGAACAGCAAACCATTTTTGGCCGTGATAAGAACAGTGGCGCACCTTTGGGAATGCAACATGAG
CATGATGAACCCAATTACGCCAAAGATCCTGAAGGGAAGGTCATCCCGATGGATGCCCATATTCGGTTAGCCAATCCACG
GACAATTGAAACGCAGCGTAACCTAATGTTGCGCCGTGGCTACAGCTACTCATTGGGGGTCTCAAACTCCGGGCAACTGG
ATATGGGGTTACTGTTTGTTTGCTATCAGTCGGATTTGGCGCAAGCGTTCTTAACGGTACAAGAACGCCTAAATGGTGAA
GCGTTGGAAGAGTATGTCAAACCAATTGGTGGGGGGTATTTCCTTACCTTACCCGGTGTTGCAGATGCTAATCACTATTT
GGCACAAAGCTTGCTCGAAGCTTAA

Upstream 100 bases:

>100_bases
ACCGATGCGGATCGTAGTGCGATGAAAGGACCAATCACTGCTCTAGCGGAAGACCTTGCTCAACTGCGTGGTGTATTAGG
TCTGGATTGAGGTTGTTAAC

Downstream 100 bases:

>100_bases
AATACAGCACCGCCATCATCGCGCGGTGCTTTTTATGACGTCTACATTCTTTTATGGCGTCGTGTTCATTGTCATTTCTT
TATGATCAACCCTTCAGCTT

Product: Dyp-type peroxidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKIAQAADCPTPDVAATQDERWQKQPFYGQHQAGVLTPQ
QAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAPSVNAKLPPLDSGIMGPEIYPDNLTVTVSVGDALFDERFGL
QGQKPLRLQRMTRFPNDSLDAGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQETPIN
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQEQQTIFGRDKNSGAPLGMQHE
HDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRGYSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGE
ALEEYVKPIGGGYFLTLPGVADANHYLAQSLLEA

Sequences:

>Translated_434_residues
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKIAQAADCPTPDVAATQDERWQKQPFYGQHQAGVLTPQ
QAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAPSVNAKLPPLDSGIMGPEIYPDNLTVTVSVGDALFDERFGL
QGQKPLRLQRMTRFPNDSLDAGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQETPIN
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQEQQTIFGRDKNSGAPLGMQHE
HDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRGYSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGE
ALEEYVKPIGGGYFLTLPGVADANHYLAQSLLEA
>Mature_434_residues
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKIAQAADCPTPDVAATQDERWQKQPFYGQHQAGVLTPQ
QAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAPSVNAKLPPLDSGIMGPEIYPDNLTVTVSVGDALFDERFGL
QGQKPLRLQRMTRFPNDSLDAGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQETPIN
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQEQQTIFGRDKNSGAPLGMQHE
HDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRGYSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGE
ALEEYVKPIGGGYFLTLPGVADANHYLAQSLLEA

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=423, Percent_Identity=71.6312056737589, Blast_Score=625, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 47763; Mature: 47763

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKIAQAADCPTPDVAATQD
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCEECCHHHHHHCCCCCCCCCCCCH
ERWQKQPFYGQHQAGVLTPQQAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAP
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
SVNAKLPPLDSGIMGPEIYPDNLTVTVSVGDALFDERFGLQGQKPLRLQRMTRFPNDSLD
CCCCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
AGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQETPIN
CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHCCCCCCCEE
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQE
EEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEEEEEEEEECCCCCCCCH
QQTIFGRDKNSGAPLGMQHEHDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEHHHHHHHHHCC
YSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGEALEEYVKPIGGGYFLTLPGV
CCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCC
ADANHYLAQSLLEA
CCCHHHHHHHHHCC
>Mature Secondary Structure
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKIAQAADCPTPDVAATQD
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCEECCHHHHHHCCCCCCCCCCCCH
ERWQKQPFYGQHQAGVLTPQQAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAP
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
SVNAKLPPLDSGIMGPEIYPDNLTVTVSVGDALFDERFGLQGQKPLRLQRMTRFPNDSLD
CCCCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
AGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQETPIN
CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHCCCCCCCEE
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQE
EEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEEEEEEEEECCCCCCCCH
QQTIFGRDKNSGAPLGMQHEHDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEHHHHHHHHHCC
YSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGEALEEYVKPIGGGYFLTLPGV
CCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCC
ADANHYLAQSLLEA
CCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]