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The map label for this gene is ycdO [H]

Identifier: 170024590

GI number: 170024590

Start: 2599370

End: 2600500

Strand: Reverse

Name: ycdO [H]

Synonym: YPK_2365

Alternate gene names: 170024590

Gene position: 2600500-2599370 (Counterclockwise)

Preceding gene: 170024591

Following gene: 170024589

Centisome position: 55.45

GC content: 47.21

Gene sequence:

>1131_bases
ATGTCTATTTGGTTCTTCCGTCGCACAGCGTTACACGCCGCGTTGTTGTCTCTGCCTGCTTTCGCTATCAGCGCACAGGC
TGCTGATATTCCACAGGTTAAAATCACTGTCAATGATAAACAATGTGAGCCAATGGCACTGACGGTTCCTGCCGGCAAAA
CACAGTTTATTGTGCACAATGTTAGCCAGAAAGGACTGGAGTGGGAGATTTTAAAAGGGGTGATGGTGGTGGAGGAACGT
GAGAATATCGCGCCAGGTTTTACCCAAAAAATGACGGCGAATCTGGAACCTGGTGAATATGATATGACCTGCGGCTTGTT
AAGTAATCCGAAAGGTAAATTAACTGTAACTGTGGCAGCAGGTGAACAAGCCCCGGTGAAACCCGATGCGATGGCATTAG
TCGGCCCGATTGCTGAATATAAGGTTTATGTCACACAAGAAGTGGCTCAGTTAGTCAGCCAAACCAAAGCGTTCACCGAT
GCAGTGAAGGCTGGGGATCTGGCACTGGCACGTAAATTGTATGCGCCGACTCGCCAGCATTATGAGCGTATCGAACCGAT
TGCCGAACTGTTCTCTGATTTGGACGGCAGTATTGATGCCCGTGAAGATGATTTTGAACAGAAATCGGCAGACCCTAAAT
TTACCGGTTTCCACCGTTTAGAAAAAATCCTGTTTGGAGATAACACAACCAAAGGTGCAGATAAGTTTGCAGACCTGTTG
TATCAGGACACATTGGAACTGCAAAAACGCATTGCTGGTCTGACATTTGCGCCTAATAAAGTGGTGGGCGGGGCGGCAGG
GTTAATTGAGGAAGTCGCAGCCAGTAAAATTAGCGGGGAAGAAGACCGCTATAGCCGTACCGATTTGTGGGATTTTCAAG
CCAACGTCGATGGCGCACAGAAAATTGTCAATCTCCTGAGGCCATTACTGGAAAAAGCAGATAAACCATTACTGCAAAAA
ATTGATGCGAATTTTAACACGGTTGATAGCGTGCTGGCGAAATATCGTACCAAAGAGGGTTATGAATCCTACGAGAAGCT
AACCGATGCGGATCGTAGTGCGATGAAAGGACCAATCACTGCTCTAGCGGAAGACCTTGCTCAACTGCGTGGTGTATTAG
GTCTGGATTGA

Upstream 100 bases:

>100_bases
TTCTGTTTTTCCTTCCACCACGTTCCACTGCGGGTTCGGCTATCGCTGCGGCGCGGAAAATTAATCCATAACTAAAATGA
TCAGTTCAGGGAGTTATTAC

Downstream 100 bases:

>100_bases
GGTTGTTAACATGAGAGACAAAACCGGCCCGAAATTCGGGCCGTATCAACCGGATGATGAGGCGGTGTCGCCGTCACGTC
GGCGCTTAATTTTAGGTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEER
ENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTD
AVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQK
IDANFNTVDSVLAKYRTKEGYESYEKLTDADRSAMKGPITALAEDLAQLRGVLGLD

Sequences:

>Translated_376_residues
MSIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEER
ENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTD
AVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQK
IDANFNTVDSVLAKYRTKEGYESYEKLTDADRSAMKGPITALAEDLAQLRGVLGLD
>Mature_375_residues
SIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEERE
NIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDA
VKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLY
QDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQKI
DANFNTVDSVLAKYRTKEGYESYEKLTDADRSAMKGPITALAEDLAQLRGVLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=371, Percent_Identity=74.1239892183288, Blast_Score=571, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41267; Mature: 41136

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHN
CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEC
VSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAA
CHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEC
GEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARKLYAPTRQH
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQ
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHH
KIVNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRSAMKGPIT
HHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALAEDLAQLRGVLGLD
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHN
CEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEC
VSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAA
CHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEC
GEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARKLYAPTRQH
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQ
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHH
KIVNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRSAMKGPIT
HHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALAEDLAQLRGVLGLD
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA