Click here to switch to the map view.

The map label for this gene is 170023537

Identifier: 170023537

GI number: 170023537

Start: 1420621

End: 1421370

Strand: Direct

Name: 170023537

Synonym: YPK_1291

Alternate gene names: NA

Gene position: 1420621-1421370 (Clockwise)

Preceding gene: 170023536

Following gene: 170023538

Centisome position: 30.29

GC content: 49.07

Gene sequence:

>750_bases
ATGAAGCTGACAAAACTGTGGAGAGTTTGCCTGGTCGTAAGTGTATTGACAGGGTGCTCCGGTACCCCACCGGAGAACAC
GAGTCAGGCAGTTGCTGGGCAGACACGCTTACAACTGGGTTTAGCGTATTTGGCACAAGGCGATCTTACTGCCGCGCGGA
AGAACCTTGAAAAAGCGGTAGAGGCGGATCCACAGGATTATCGCACTCAATTAGGGATGGCATTTTATGCGCAACGTATT
GGTGAAAACAGTGCCGCAGAGCAGCGTTATCAACAAGCAATGAAACTGGCTCCGGGAAATGGCACTGTACTGAATAATTA
CGGTGCGTTTCTGTGTAGTTTAGGGCAGTATGTATCGGCGCAACAACAGTTTAGTGCTGCGGCATTGCTACCTGATTACG
GTCAGGTTGCTGATAGTCTGGAAAACGCAGGTTATTGCTTTTTACGGGCTAATCAGGATAAACAAGCTCGGGTCTTGTTG
AGCCGGGCGTTGAAGTATGATCCGGATAAAGGCGAGCCTTTGCTTGCGGAAGCCCAAAGGCATTTTGGGGAAGGTAATCG
CGCACAAGCGCAACTATTACTGGATGTTTACCAACATACGCTTCCAGCCAGTGCTGAGAGTTTATGGTTACAAATTCGTT
TCGCCGCGCTGGCAGGCCGTCAAGATAGTGTACAACGCTATGGCAAGCAGCTTGCGCGAAGTTTTCCACAATCCAAACAG
TACCAGCATTTTCTAGCTAATGAATACTGA

Upstream 100 bases:

>100_bases
GAAGTCTCATCGCGTAAAGGTGGCTAAAAACCCGTGATGAGAATACCATGAGCGCCAGAATTTGGTACTTATCTGCATAT
ATAAGGACAATTGAGAAAGC

Downstream 100 bases:

>100_bases
AGCCTCCCAAGATCAAACTGTTACAGAGACGCCAGGTGTGCGCCTGCGTCAAGCCCGCGAATCATTAGGGCTAACCCAGC
AGACTGTTGCAGAACGTCTG

Product: type IV pilus biogenesis/stability protein PilW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKLTKLWRVCLVVSVLTGCSGTPPENTSQAVAGQTRLQLGLAYLAQGDLTAARKNLEKAVEADPQDYRTQLGMAFYAQRI
GENSAAEQRYQQAMKLAPGNGTVLNNYGAFLCSLGQYVSAQQQFSAAALLPDYGQVADSLENAGYCFLRANQDKQARVLL
SRALKYDPDKGEPLLAEAQRHFGEGNRAQAQLLLDVYQHTLPASAESLWLQIRFAALAGRQDSVQRYGKQLARSFPQSKQ
YQHFLANEY

Sequences:

>Translated_249_residues
MKLTKLWRVCLVVSVLTGCSGTPPENTSQAVAGQTRLQLGLAYLAQGDLTAARKNLEKAVEADPQDYRTQLGMAFYAQRI
GENSAAEQRYQQAMKLAPGNGTVLNNYGAFLCSLGQYVSAQQQFSAAALLPDYGQVADSLENAGYCFLRANQDKQARVLL
SRALKYDPDKGEPLLAEAQRHFGEGNRAQAQLLLDVYQHTLPASAESLWLQIRFAALAGRQDSVQRYGKQLARSFPQSKQ
YQHFLANEY
>Mature_249_residues
MKLTKLWRVCLVVSVLTGCSGTPPENTSQAVAGQTRLQLGLAYLAQGDLTAARKNLEKAVEADPQDYRTQLGMAFYAQRI
GENSAAEQRYQQAMKLAPGNGTVLNNYGAFLCSLGQYVSAQQQFSAAALLPDYGQVADSLENAGYCFLRANQDKQARVLL
SRALKYDPDKGEPLLAEAQRHFGEGNRAQAQLLLDVYQHTLPASAESLWLQIRFAALAGRQDSVQRYGKQLARSFPQSKQ
YQHFLANEY

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013360
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27499; Mature: 27499

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCC
>Mature Secondary Structure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HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]