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The map label for this gene is rodZ

Identifier: 170023538

GI number: 170023538

Start: 1421360

End: 1422466

Strand: Direct

Name: rodZ

Synonym: YPK_1292

Alternate gene names: 170023538

Gene position: 1421360-1422466 (Clockwise)

Preceding gene: 170023537

Following gene: 170023539

Centisome position: 30.31

GC content: 48.78

Gene sequence:

>1107_bases
ATGAATACTGAAGCCTCCCAAGATCAAACTGTTACAGAGACGCCAGGTGTGCGCCTGCGTCAAGCCCGCGAATCATTAGG
GCTAACCCAGCAGACTGTTGCAGAACGTCTGTGTCTGAAAGTATCCACAATCCGTGATATTGAGGAGGATAACGCGCAAG
CTAATCTCGCCTCGACATTCCACCGTGGCTACATTCGTTCTTACGCCAAGCTGGTTCATCTTCCTGAAGATGAGTTATTG
CCTATTTTGGAGAAACAAGCGCCAGTCAGAGCGGCGAAAGTTGCCCCAATGCAAAGTTTTTCATTGGGTAAAAAACACAA
AAAACGTGATGGCTGGTTGATGAGTTTCACCTGGCTTATTGTGTTGGTTGTGTTAGGTCTGACCGGAGCATGGTGGTGGC
AAAATCATCAGGCACAGCAAGCAGAGATTGCCAATATGGTTGATCAATCTTCTGCCCAACTGTCACAAAATGGCGGGCAA
CCAGTGCCGCTAACTGATGATAACAGCGATGCTATTGCGCCAACGGATGCCCCGGCACCGGTAGCCAATGGTCAGCCGGT
ACCACTGACAAATCATTCAACTTCGGCAGTAACTAATTCAGCTACAACCAGTTCAGCTACAACCAGTTCAGTTCCAACAA
CAAGTTCAGTTCCAAAAACAACTTTAGTTCCAAAAACAACTTTAGTTCCAAAAACAAATAGTACTGAACCTGTCGATACG
GCGAATACAAATACCACAATGCATCAGGAGGGGGCTGCGTCAGCGGCCGTTTCCCCAAGTCAGGTACCGCAACTTGGTAT
GCCCACAGACCAACCGCCATTACCTACAGCAGACGCTGGGGTAAGTGGTAGCGCGTCATCTGTGGGGGCGTTGGTGATGA
ATTTTACAGCAGATTGTTGGTTGCAGGTTGTTGATGCAACGGGCAAGACGCTGTTTAGTGGTATTCAAAAAGGGGGCGCT
GTGCTTAACCTGGCAGGTAAAGCGCCCTATAAGCTGACTATCGGTGCACCAGGTGCTCTGACGATTTCGTATCAGGGTAA
CCCGGTAGATTTAAGTAAGTTTATTAAGGCTAATCGCGTAGCCCGCCTGACTGTCGGTGTAGAGTAG

Upstream 100 bases:

>100_bases
TTCGCCGCGCTGGCAGGCCGTCAAGATAGTGTACAACGCTATGGCAAGCAGCTTGCGCGAAGTTTTCCACAATCCAAACA
GTACCAGCATTTTCTAGCTA

Downstream 100 bases:

>100_bases
AATGATGGTTTTGACAAGCACCCTTGTAGTTTTGGTAAATACTATGATGGTTTTGACAAATATCATGTTGTAAGAACTAC
ACGACCGTAAAGGAGAGTAT

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSTSAVTNSATTSSATTSSVPTTSSVPKTTLVPKTTLVPKTNSTEPVDT
ANTNTTMHQEGAASAAVSPSQVPQLGMPTDQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGA
VLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE

Sequences:

>Translated_368_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSTSAVTNSATTSSATTSSVPTTSSVPKTTLVPKTTLVPKTNSTEPVDT
ANTNTTMHQEGAASAAVSPSQVPQLGMPTDQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGA
VLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE
>Mature_368_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSTSAVTNSATTSSATTSSVPTTSSVPKTTLVPKTTLVPKTNSTEPVDT
ANTNTTMHQEGAASAAVSPSQVPQLGMPTDQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGA
VLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788864, Length=368, Percent_Identity=54.6195652173913, Blast_Score=373, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RODZ_YERPY (B1JS04)

Other databases:

- EMBL:   CP000950
- RefSeq:   YP_001720043.1
- GeneID:   6088976
- GenomeReviews:   CP000950_GR
- KEGG:   ypy:YPK_1292
- HOGENOM:   HBG678691
- OMA:   KLPGHTF
- ProtClustDB:   PRK10856
- HAMAP:   MF_02017
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 38811; Mature: 38811

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1666cdfc)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTF
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHCCHHHHHCCCCHHHHHHHH
VLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNSDAIAPTDAPAP
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
VANGQPVPLTNHSTSAVTNSATTSSATTSSVPTTSSVPKTTLVPKTTLVPKTNSTEPVDT
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
ANTNTTMHQEGAASAAVSPSQVPQLGMPTDQPPLPTADAGVSGSASSVGALVMNFTADCW
CCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRV
HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCE
ARLTVGVE
EEEEEECH
>Mature Secondary Structure
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTF
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHCCHHHHHCCCCHHHHHHHH
VLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNSDAIAPTDAPAP
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
VANGQPVPLTNHSTSAVTNSATTSSATTSSVPTTSSVPKTTLVPKTTLVPKTNSTEPVDT
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
ANTNTTMHQEGAASAAVSPSQVPQLGMPTDQPPLPTADAGVSGSASSVGALVMNFTADCW
CCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRV
HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCE
ARLTVGVE
EEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA