Click here to switch to the map view.

The map label for this gene is ymfP [C]

Identifier: 170022446

GI number: 170022446

Start: 236316

End: 237377

Strand: Reverse

Name: ymfP [C]

Synonym: YPK_0185

Alternate gene names: 170022446

Gene position: 237377-236316 (Counterclockwise)

Preceding gene: 170022447

Following gene: 170022445

Centisome position: 5.06

GC content: 48.31

Gene sequence:

>1062_bases
ATGCCCCATATTACACCCACCGTCGAGGCTATTCGTTCCAATATTTTACGCGATATACGTAATTTATTAGTCGATGCCGA
TATTTCTGAAAACAGTGATTATTATATTCGGGCTTCATCGGTTGCCAGTTGTGTGGCTGGAATATATCAGGATCAAGGCT
GGATTGTTCGTCAGATATTCCCCGACACTGCTGATATTGAGTTTCTGGAATTGCATTGCAGAACACGGGGCATCGTTCGC
AAGCCTGCAAATACCGCAACAGGCACTATTGATATCACAGGTGAGCCTAATGCCATCGTAGCCAGTGGATTAACCGTGAC
GCGTGATGCACTCTCATTTGTGACCACTCAACGCGCCACTGTCGGGCTTGACGGCAAGTTAACCGTGGTCGCGCAGGCCG
CTATTGCAGGCGCAGCCGGAAACACGACACAGGTGATGTCGGGCACGTTGTCATCAACTCCAGATGGGGTGGATAGCACT
GTTATCATTGGCGTTATGCGCGGGGGGACTGACCAAGAAAGCCCGGAAGACCTGCTGGCACGGTTGCTCGATATTATTCG
CCGCCCTCCTGCTGGCGGGAATAAATATGACTACAAGCGCTGGGCGCTGGAAGTGACTGGCGTAACTGCAGCGTTTGTTT
ACCCATTACGTCGTGGCTTAGGCACCGTCGATATTGTGATCACCTCTGCTGATGGCTTGCCATCCCAAGCCATTATTGCC
GATACACAGCTTCATATTGATGACGTTCGTCCGGTGACAGCCAAGAGTTCATTGGTGATGGCTCCGACGATTAAGGTATT
TGATATCGAAGTTAAAGTCACACTAAATGGTATTACTTTCGATGTTGCGGAAATATTAATTAAAGAGGCTTTAAATAATT
ATATAAACCGTCTGATGCCAGGTGAAACTTTTATTCGCAGTCAGGCTGAAATGTTGGTTTCGTTTATTACAGGCATCACT
GACCGAAAAATAATCACGCCCGTCGATAATGTTACCCCACAGGTCGATGATTCTGTTGTCGAGTGGTTGCGTGTCGGGAC
CATCACCGTGGCTCTGCTATGA

Upstream 100 bases:

>100_bases
CAGCGACCCGATTAATGCCCGGCTGGCTGTTACTGCATATCGTGGTGGAAACCGCCTCCAATCAATCAGAAACGTTTCGC
CATCAAGTGAGGGTTGCCTA

Downstream 100 bases:

>100_bases
CATTCTCAACTTTATTGGGCCTGCTATTACCGCCCGTTGCCTATGACTCTCAGCAGCCAAAAATCCATGCTGAAATGCAG
GCTGAAGGTAACGAACTTGA

Product: baseplate J family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MPHITPTVEAIRSNILRDIRNLLVDADISENSDYYIRASSVASCVAGIYQDQGWIVRQIFPDTADIEFLELHCRTRGIVR
KPANTATGTIDITGEPNAIVASGLTVTRDALSFVTTQRATVGLDGKLTVVAQAAIAGAAGNTTQVMSGTLSSTPDGVDST
VIIGVMRGGTDQESPEDLLARLLDIIRRPPAGGNKYDYKRWALEVTGVTAAFVYPLRRGLGTVDIVITSADGLPSQAIIA
DTQLHIDDVRPVTAKSSLVMAPTIKVFDIEVKVTLNGITFDVAEILIKEALNNYINRLMPGETFIRSQAEMLVSFITGIT
DRKIITPVDNVTPQVDDSVVEWLRVGTITVALL

Sequences:

>Translated_353_residues
MPHITPTVEAIRSNILRDIRNLLVDADISENSDYYIRASSVASCVAGIYQDQGWIVRQIFPDTADIEFLELHCRTRGIVR
KPANTATGTIDITGEPNAIVASGLTVTRDALSFVTTQRATVGLDGKLTVVAQAAIAGAAGNTTQVMSGTLSSTPDGVDST
VIIGVMRGGTDQESPEDLLARLLDIIRRPPAGGNKYDYKRWALEVTGVTAAFVYPLRRGLGTVDIVITSADGLPSQAIIA
DTQLHIDDVRPVTAKSSLVMAPTIKVFDIEVKVTLNGITFDVAEILIKEALNNYINRLMPGETFIRSQAEMLVSFITGIT
DRKIITPVDNVTPQVDDSVVEWLRVGTITVALL
>Mature_352_residues
PHITPTVEAIRSNILRDIRNLLVDADISENSDYYIRASSVASCVAGIYQDQGWIVRQIFPDTADIEFLELHCRTRGIVRK
PANTATGTIDITGEPNAIVASGLTVTRDALSFVTTQRATVGLDGKLTVVAQAAIAGAAGNTTQVMSGTLSSTPDGVDSTV
IIGVMRGGTDQESPEDLLARLLDIIRRPPAGGNKYDYKRWALEVTGVTAAFVYPLRRGLGTVDIVITSADGLPSQAIIAD
TQLHIDDVRPVTAKSSLVMAPTIKVFDIEVKVTLNGITFDVAEILIKEALNNYINRLMPGETFIRSQAEMLVSFITGITD
RKIITPVDNVTPQVDDSVVEWLRVGTITVALL

Specific function: Unknown

COG id: COG3299

COG function: function code S; Uncharacterized homolog of phage Mu protein gp47

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mu gp47/PBSX XkdT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006949 [H]

Pfam domain/function: PF04865 Baseplate_J [H]

EC number: NA

Molecular weight: Translated: 38032; Mature: 37901

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHITPTVEAIRSNILRDIRNLLVDADISENSDYYIRASSVASCVAGIYQDQGWIVRQIF
CCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEC
PDTADIEFLELHCRTRGIVRKPANTATGTIDITGEPNAIVASGLTVTRDALSFVTTQRAT
CCCCCEEEEEEEHHHCCCEECCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHCCEE
VGLDGKLTVVAQAAIAGAAGNTTQVMSGTLSSTPDGVDSTVIIGVMRGGTDQESPEDLLA
ECCCCCEEEEEEHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHH
RLLDIIRRPPAGGNKYDYKRWALEVTGVTAAFVYPLRRGLGTVDIVITSADGLPSQAIIA
HHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEE
DTQLHIDDVRPVTAKSSLVMAPTIKVFDIEVKVTLNGITFDVAEILIKEALNNYINRLMP
ECEEEECCCCCCCCCCCEEEECEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
GETFIRSQAEMLVSFITGITDRKIITPVDNVTPQVDDSVVEWLRVGTITVALL
CHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHCEEEEEEC
>Mature Secondary Structure 
PHITPTVEAIRSNILRDIRNLLVDADISENSDYYIRASSVASCVAGIYQDQGWIVRQIF
CCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEC
PDTADIEFLELHCRTRGIVRKPANTATGTIDITGEPNAIVASGLTVTRDALSFVTTQRAT
CCCCCEEEEEEEHHHCCCEECCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHCCEE
VGLDGKLTVVAQAAIAGAAGNTTQVMSGTLSSTPDGVDSTVIIGVMRGGTDQESPEDLLA
ECCCCCEEEEEEHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHH
RLLDIIRRPPAGGNKYDYKRWALEVTGVTAAFVYPLRRGLGTVDIVITSADGLPSQAIIA
HHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEE
DTQLHIDDVRPVTAKSSLVMAPTIKVFDIEVKVTLNGITFDVAEILIKEALNNYINRLMP
ECEEEECCCCCCCCCCCEEEECEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
GETFIRSQAEMLVSFITGITDRKIITPVDNVTPQVDDSVVEWLRVGTITVALL
CHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]