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The map label for this gene is yeaM [H]

Identifier: 169628430

GI number: 169628430

Start: 1338931

End: 1339671

Strand: Reverse

Name: yeaM [H]

Synonym: MAB_1337c

Alternate gene names: 169628430

Gene position: 1339671-1338931 (Counterclockwise)

Preceding gene: 169628437

Following gene: 169628428

Centisome position: 26.44

GC content: 64.51

Gene sequence:

>741_bases
GTGTTGATTAACCGCCACCTCACCGGGGTGATGTCGGTGGCCGGTGGTCATCGCATCAACCGCCATTGGCATCAGGAACA
CCAAATCGTGTATCCGGCCAGCGGCGTTCTGGCAGTCACCACCGATGAAGGAACCTGGATCGCACCCCCGAACCGCGCGT
TGTGGATACCGTCCGGTGCCGGTCACGAGCACCGCTTCTATGGCCCCACCCAGTTTCATTCGGTGGCTTTCGATCCCGGT
GTCTACCCGGTGGAGCTGGCCAGCCCGACCGTCATCGCGGTGTCACCTCTGCTGCGCGAACTCATCATCACGTGTTCTGA
CCCTGGTGATCTGCCCGAGGAGGAAGTCGCCCGGTTGCGCGTCGTGCTCATCGACCAACTCCGGCACAGCCCCGAACAGG
CCCTCAGGCTGCCCACCCCCCACGATGAGCGCTTGGCCGAGGCGTGCGCACTGGTGGAGGAAGATCTGACCCAGGTGTGG
ACGGTGGCCGACCTCGGGCGGCGGGTGGGGGCCAGCGAGCGCACGCTGACCAGGTTGTTCCGTACCGATATGGGCATGAC
GTATCCGCAGTGGCGTACCCAGATCCGCCTCCATCACGCGTTGCGGCTACTCGCCGAGGATCGTCCGGTGACCTACGTGG
CGCATCAATGCGGTTGGGCCACACCGAGCGCATTCATCGACGTGTATCGACGCACGCTCGGTCAGACACCCGGAACGTAC
GCCGCACCCGTCACACGGTGA

Upstream 100 bases:

>100_bases
GTCATGCCGCACGGTCAGCTGTTCATCGTTCGCCAAATCGGTCACGAGGGACGAGATTATGGGTTTGCCGAGCCGTAAGC
CTCCGATAAAATGCCATCTT

Downstream 100 bases:

>100_bases
GATAACGCCGAAGTACCTCGGTGACGGCGGTGATCTGCTGGACGGGAACGTGTTCGCCGCGGGTATGTGCCAAGTTGGGA
TCGCCGGGCCCGTAGTTGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MLINRHLTGVMSVAGGHRINRHWHQEHQIVYPASGVLAVTTDEGTWIAPPNRALWIPSGAGHEHRFYGPTQFHSVAFDPG
VYPVELASPTVIAVSPLLRELIITCSDPGDLPEEEVARLRVVLIDQLRHSPEQALRLPTPHDERLAEACALVEEDLTQVW
TVADLGRRVGASERTLTRLFRTDMGMTYPQWRTQIRLHHALRLLAEDRPVTYVAHQCGWATPSAFIDVYRRTLGQTPGTY
AAPVTR

Sequences:

>Translated_246_residues
MLINRHLTGVMSVAGGHRINRHWHQEHQIVYPASGVLAVTTDEGTWIAPPNRALWIPSGAGHEHRFYGPTQFHSVAFDPG
VYPVELASPTVIAVSPLLRELIITCSDPGDLPEEEVARLRVVLIDQLRHSPEQALRLPTPHDERLAEACALVEEDLTQVW
TVADLGRRVGASERTLTRLFRTDMGMTYPQWRTQIRLHHALRLLAEDRPVTYVAHQCGWATPSAFIDVYRRTLGQTPGTY
AAPVTR
>Mature_246_residues
MLINRHLTGVMSVAGGHRINRHWHQEHQIVYPASGVLAVTTDEGTWIAPPNRALWIPSGAGHEHRFYGPTQFHSVAFDPG
VYPVELASPTVIAVSPLLRELIITCSDPGDLPEEEVARLRVVLIDQLRHSPEQALRLPTPHDERLAEACALVEEDLTQVW
TVADLGRRVGASERTLTRLFRTDMGMTYPQWRTQIRLHHALRLLAEDRPVTYVAHQCGWATPSAFIDVYRRTLGQTPGTY
AAPVTR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=30.0884955752212, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 27592; Mature: 27592

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLINRHLTGVMSVAGGHRINRHWHQEHQIVYPASGVLAVTTDEGTWIAPPNRALWIPSGA
CCCCHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCEEEEEECCCCEECCCCCEEECCCCC
GHEHRFYGPTQFHSVAFDPGVYPVELASPTVIAVSPLLRELIITCSDPGDLPEEEVARLR
CCCCCCCCCCHHCEEEECCCCCEEECCCCCEEHHHHHHHHHHEECCCCCCCCHHHHHHHH
VVLIDQLRHSPEQALRLPTPHDERLAEACALVEEDLTQVWTVADLGRRVGASERTLTRLF
HHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RTDMGMTYPQWRTQIRLHHALRLLAEDRPVTYVAHQCGWATPSAFIDVYRRTLGQTPGTY
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHHCCCCCCC
AAPVTR
CCCCCC
>Mature Secondary Structure
MLINRHLTGVMSVAGGHRINRHWHQEHQIVYPASGVLAVTTDEGTWIAPPNRALWIPSGA
CCCCHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCEEEEEECCCCEECCCCCEEECCCCC
GHEHRFYGPTQFHSVAFDPGVYPVELASPTVIAVSPLLRELIITCSDPGDLPEEEVARLR
CCCCCCCCCCHHCEEEECCCCCEEECCCCCEEHHHHHHHHHHEECCCCCCCCHHHHHHHH
VVLIDQLRHSPEQALRLPTPHDERLAEACALVEEDLTQVWTVADLGRRVGASERTLTRLF
HHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RTDMGMTYPQWRTQIRLHHALRLLAEDRPVTYVAHQCGWATPSAFIDVYRRTLGQTPGTY
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHHCCCCCCC
AAPVTR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]