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The map label for this gene is ccmH [H]

Identifier: 167626004

GI number: 167626004

Start: 5001673

End: 5002140

Strand: Reverse

Name: ccmH [H]

Synonym: Shal_4099

Alternate gene names: 167626004

Gene position: 5002140-5001673 (Counterclockwise)

Preceding gene: 167626005

Following gene: 167626003

Centisome position: 95.7

GC content: 42.09

Gene sequence:

>468_bases
ATGAAGGGCTTTTCGGCTCTAGTGCTTCTACTAAGCATGGCAACGATCGTTAATGCTACACCAGTCGACACTTATGAGTT
TAAGTCTGTTGATAATCAGAAGCGTGCGTTAAGTCTTGCTCACTCATTGCGTTGTCCACAGTGTCAAAACCAAAACTTAA
TCGATTCTAACTCTCCGGTTGCTCAAGACTTACGTTTAGAAGTTTACCAGATGGTTGATGAAGGTAAGGGCGATGACGAA
ATTGTTGAGTTTATGACGAGTCGTTACGGTGAGTTCGTCTTATATAAGCCGAGAATGGAAGCTAAAACTTACGTTCTTTG
GTTAGGTCCTATTGCTTTGCTATTGTTTGGTGGCGTGATCGGTTTCTTCTTTATCCGCAAGCAGCGCATAGCAGAATCGA
ACAATCAAGAGCTATCAAGTGAAGAACAGCAAGAGTTAGATCGTCTATTAAAGCGAGACGCTAAATGA

Upstream 100 bases:

>100_bases
GGCCAATTGACCGTAATGTATGGAAAGAAACACTTTACCCTATGGTTCAACAGCTACAAGCTGAAGCGGCGAAGGATGGT
GCATCGTGATTAAATCATTA

Downstream 100 bases:

>100_bases
GATCGACCATAGTGGGTCTAGTTGCAGCAACGATGTTGGTTGCTGCTGGGGCGCAGGCCTATCCTGGAATGGAAAAGCAA
GCTGAAAGCCAAGTTCAATC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKGFSALVLLLSMATIVNATPVDTYEFKSVDNQKRALSLAHSLRCPQCQNQNLIDSNSPVAQDLRLEVYQMVDEGKGDDE
IVEFMTSRYGEFVLYKPRMEAKTYVLWLGPIALLLFGGVIGFFFIRKQRIAESNNQELSSEEQQELDRLLKRDAK

Sequences:

>Translated_155_residues
MKGFSALVLLLSMATIVNATPVDTYEFKSVDNQKRALSLAHSLRCPQCQNQNLIDSNSPVAQDLRLEVYQMVDEGKGDDE
IVEFMTSRYGEFVLYKPRMEAKTYVLWLGPIALLLFGGVIGFFFIRKQRIAESNNQELSSEEQQELDRLLKRDAK
>Mature_155_residues
MKGFSALVLLLSMATIVNATPVDTYEFKSVDNQKRALSLAHSLRCPQCQNQNLIDSNSPVAQDLRLEVYQMVDEGKGDDE
IVEFMTSRYGEFVLYKPRMEAKTYVLWLGPIALLLFGGVIGFFFIRKQRIAESNNQELSSEEQQELDRLLKRDAK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1790512, Length=86, Percent_Identity=52.3255813953488, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1788522, Length=113, Percent_Identity=40.7079646017699, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17684; Mature: 17684

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFSALVLLLSMATIVNATPVDTYEFKSVDNQKRALSLAHSLRCPQCQNQNLIDSNSPV
CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCH
AQDLRLEVYQMVDEGKGDDEIVEFMTSRYGEFVLYKPRMEAKTYVLWLGPIALLLFGGVI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHEEHHHHHHHHHHHHHH
GFFFIRKQRIAESNNQELSSEEQQELDRLLKRDAK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKGFSALVLLLSMATIVNATPVDTYEFKSVDNQKRALSLAHSLRCPQCQNQNLIDSNSPV
CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCH
AQDLRLEVYQMVDEGKGDDEIVEFMTSRYGEFVLYKPRMEAKTYVLWLGPIALLLFGGVI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHEEHHHHHHHHHHHHHH
GFFFIRKQRIAESNNQELSSEEQQELDRLLKRDAK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]