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The map label for this gene is ywbI [H]

Identifier: 167625854

GI number: 167625854

Start: 4815876

End: 4816724

Strand: Reverse

Name: ywbI [H]

Synonym: Shal_3949

Alternate gene names: 167625854

Gene position: 4816724-4815876 (Counterclockwise)

Preceding gene: 167625858

Following gene: 167625853

Centisome position: 92.15

GC content: 38.87

Gene sequence:

>849_bases
ATGATTAACAATACGGTAATTTATCATTTTTATTATTCTGCAAAGTTCTCGTCTTTCTCAAAAGCCGCCAGTTTTTTAAA
GACAACGCAGCCAAATGTAAGTTCTAGCATTATTGCTTTAGAGAAAAGGATGGGTACTAAACTATTTGAACGACAAAGCC
ACGGAGTCCGATTGACTCCTGCAGGAAGTGATATTTACCTAAAGGCTGAAGCCGTTATTATTTCGCTTAATGATATGAAC
TCAGCATTGTCGCAGATTAATAGAAAGTCGGTTATTAAAATTGCAACTCAGCCTAGATTGTATGAAAAGTATTTGTCATC
TAAGTTAACGCCGGAGTTCATCGAAGAGTTTTTTATTCAAATTAATACTGGCGAACTGGCAACGATTAAAGGCTGGATGG
ACTCGGGTGATGTCGACCTAGTTATTACCGAGGGGATATTCCATAATCACCCCATATTTGAACATGTTGATGAACTGGAT
AATCTTAAGTTTTTTTGGGCAAAGAAGAGAGGCATTGAGTTTGCAGCTCCTATCCCTACCTTTGTGCATTCTGATGTATG
GAATCATTGGCATGATCTGAGCGAGTGTATGTATAACAACCCAGACTTCAGAAAGGTCATGGTGATCGACACGCCAGACT
TTTCTTGTAAATTAATCGAGCGGGGTATGGGGATCGGTCTATTACCTGAACAGATTATTCTGAATAACGACATGCTTGAA
AAATGTGTTGGACCGACAGAGGGAGATATCGATGGCCCTATTGCTATCTATGTTAATCAAGAGCGCAAGTTGGAATTACA
GCAAATAGGCTTAACTAATAAAATTATCTCTAACAACAGTGAAGGGTGA

Upstream 100 bases:

>100_bases
ATCAATAGGTATTTTTCACTAGGGTTATTTTTAGCGAATTAACGTGTGTTTGATTGTAATCTCATAACCATAAAAATATA
GACTTAGAGCACATAGCGCT

Downstream 100 bases:

>100_bases
TTTTTTATTACTTAATGTAGCTGAGACGATTCTCTGAACAAAAGTAATGTGCTTATTGTCACGATTATCTTGGTAGTATG
ATTGTCCTCATAAATATAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MINNTVIYHFYYSAKFSSFSKAASFLKTTQPNVSSSIIALEKRMGTKLFERQSHGVRLTPAGSDIYLKAEAVIISLNDMN
SALSQINRKSVIKIATQPRLYEKYLSSKLTPEFIEEFFIQINTGELATIKGWMDSGDVDLVITEGIFHNHPIFEHVDELD
NLKFFWAKKRGIEFAAPIPTFVHSDVWNHWHDLSECMYNNPDFRKVMVIDTPDFSCKLIERGMGIGLLPEQIILNNDMLE
KCVGPTEGDIDGPIAIYVNQERKLELQQIGLTNKIISNNSEG

Sequences:

>Translated_282_residues
MINNTVIYHFYYSAKFSSFSKAASFLKTTQPNVSSSIIALEKRMGTKLFERQSHGVRLTPAGSDIYLKAEAVIISLNDMN
SALSQINRKSVIKIATQPRLYEKYLSSKLTPEFIEEFFIQINTGELATIKGWMDSGDVDLVITEGIFHNHPIFEHVDELD
NLKFFWAKKRGIEFAAPIPTFVHSDVWNHWHDLSECMYNNPDFRKVMVIDTPDFSCKLIERGMGIGLLPEQIILNNDMLE
KCVGPTEGDIDGPIAIYVNQERKLELQQIGLTNKIISNNSEG
>Mature_282_residues
MINNTVIYHFYYSAKFSSFSKAASFLKTTQPNVSSSIIALEKRMGTKLFERQSHGVRLTPAGSDIYLKAEAVIISLNDMN
SALSQINRKSVIKIATQPRLYEKYLSSKLTPEFIEEFFIQINTGELATIKGWMDSGDVDLVITEGIFHNHPIFEHVDELD
NLKFFWAKKRGIEFAAPIPTFVHSDVWNHWHDLSECMYNNPDFRKVMVIDTPDFSCKLIERGMGIGLLPEQIILNNDMLE
KCVGPTEGDIDGPIAIYVNQERKLELQQIGLTNKIISNNSEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32026; Mature: 32026

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINNTVIYHFYYSAKFSSFSKAASFLKTTQPNVSSSIIALEKRMGTKLFERQSHGVRLTP
CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHCCCCEEEEE
AGSDIYLKAEAVIISLNDMNSALSQINRKSVIKIATQPRLYEKYLSSKLTPEFIEEFFIQ
CCCCEEEEEEEEEEEECHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHEE
INTGELATIKGWMDSGDVDLVITEGIFHNHPIFEHVDELDNLKFFWAKKRGIEFAAPIPT
ECCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCEEECCCCH
FVHSDVWNHWHDLSECMYNNPDFRKVMVIDTPDFSCKLIERGMGIGLLPEQIILNNDMLE
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCCHHHHHCCHHHH
KCVGPTEGDIDGPIAIYVNQERKLELQQIGLTNKIISNNSEG
HHCCCCCCCCCCCEEEEECCCCCCHHHHCCCHHHHHCCCCCC
>Mature Secondary Structure
MINNTVIYHFYYSAKFSSFSKAASFLKTTQPNVSSSIIALEKRMGTKLFERQSHGVRLTP
CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHCCCCEEEEE
AGSDIYLKAEAVIISLNDMNSALSQINRKSVIKIATQPRLYEKYLSSKLTPEFIEEFFIQ
CCCCEEEEEEEEEEEECHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHEE
INTGELATIKGWMDSGDVDLVITEGIFHNHPIFEHVDELDNLKFFWAKKRGIEFAAPIPT
ECCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCEEECCCCH
FVHSDVWNHWHDLSECMYNNPDFRKVMVIDTPDFSCKLIERGMGIGLLPEQIILNNDMLE
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCCHHHHHCCHHHH
KCVGPTEGDIDGPIAIYVNQERKLELQQIGLTNKIISNNSEG
HHCCCCCCCCCCCEEEEECCCCCCHHHHCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]