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The map label for this gene is yidZ [H]

Identifier: 167625853

GI number: 167625853

Start: 4814409

End: 4815395

Strand: Reverse

Name: yidZ [H]

Synonym: Shal_3948

Alternate gene names: 167625853

Gene position: 4815395-4814409 (Counterclockwise)

Preceding gene: 167625854

Following gene: 167625850

Centisome position: 92.13

GC content: 48.73

Gene sequence:

>987_bases
ATGATAAGCATAACTTACGCTGGCCCTAAAAGGTTGTTTGTGAAACAGTTGGATTTCAATTTACTCAGAGTGTTAGAAGT
GCTGCTTGAAGAGCAGAGCGTGACGGCTGCTGCGTCGAGACTACATTTGAGTCAGTCCGCGGTGAGTAAGCAGCTGAGTA
AACTGAGGGAAACCTTCGATGACCAGTTGTTTGAACGCACGGCCTATGGCTTAAAAGCCACGCCCCGTGCTTTGCAGTTG
GCGCCTGAGTTGAGAGAGGTACTGCAAAAGCTTGATCAATTTACTCGACCCAGTACCTTTGACCCGGCTGAGAGTCAGCG
TCGCTTTCGTATGCATATTGTTGAAACCGCCTACTCGCTAACCTACCCCCACTTTATGCCAAAGCTGCTAAAAGCCGCGC
CTCAGGTGAGTATTAATGGTCATACTTGGTCGCATACCAGTATGGACATGCTGCTACGCTGTGAAATTGATATGGGTATT
ATCTGCCGTGAGTGGGATAAGCGCTCCTTGCTGCATATGAACAACTTACCGGAAGAGCTCGGAGCGACAGAGCTTATTCG
TGACTATCCTGTGTGCCTGCTAAGGCGCGATCATCCTGCACTGAAGGAACCGTGGAACTTAGATACTTTTCTAAAATACC
GTCATCTGCAAGTGGCCTTTGGTGGCTTGGAGCACTGGCTGCTCGATGATGTACTACGTCTAGATCATCTACAGCGCGAT
ATCGCGGTCAATATGACCGACTTTAATTGTGCGATGGACTTGTGTGAGAACAGCGATCTTATCTTGTGTGCGCCGCGAAA
ATATATTCAGCAGATGGTGGCAAACTATGACTTGGTTTGCCTCGATGTCCCTGTGCATGTTGAGCCTGGTGCCTATGTCT
TAGTCTGGCATAAGCACTTTAATTTAGATCCGAGCCATCGCTGGCTGCGCAACTTAATTGTTGATGGGGTACAAACACAA
GCGGCAGCTATCGAGTCTGGTCGCTAG

Upstream 100 bases:

>100_bases
CGAAGAGGATGAATCCTAGTCGTATATTTAGCCGTCGTTATATTGATTAGTCTGCCAGATAAGTCGAATTTCCATAGCGT
TAGTTCACAAAGCCTTTATT

Downstream 100 bases:

>100_bases
ATTTCATCGCGAAAAACTTGAATATGGTCGTCTCGATGCTTGGCTTGATACATGGCGATATCGGCGTGTCTTAATAGTGC
TTTTCGATTATCACCATGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MISITYAGPKRLFVKQLDFNLLRVLEVLLEEQSVTAAASRLHLSQSAVSKQLSKLRETFDDQLFERTAYGLKATPRALQL
APELREVLQKLDQFTRPSTFDPAESQRRFRMHIVETAYSLTYPHFMPKLLKAAPQVSINGHTWSHTSMDMLLRCEIDMGI
ICREWDKRSLLHMNNLPEELGATELIRDYPVCLLRRDHPALKEPWNLDTFLKYRHLQVAFGGLEHWLLDDVLRLDHLQRD
IAVNMTDFNCAMDLCENSDLILCAPRKYIQQMVANYDLVCLDVPVHVEPGAYVLVWHKHFNLDPSHRWLRNLIVDGVQTQ
AAAIESGR

Sequences:

>Translated_328_residues
MISITYAGPKRLFVKQLDFNLLRVLEVLLEEQSVTAAASRLHLSQSAVSKQLSKLRETFDDQLFERTAYGLKATPRALQL
APELREVLQKLDQFTRPSTFDPAESQRRFRMHIVETAYSLTYPHFMPKLLKAAPQVSINGHTWSHTSMDMLLRCEIDMGI
ICREWDKRSLLHMNNLPEELGATELIRDYPVCLLRRDHPALKEPWNLDTFLKYRHLQVAFGGLEHWLLDDVLRLDHLQRD
IAVNMTDFNCAMDLCENSDLILCAPRKYIQQMVANYDLVCLDVPVHVEPGAYVLVWHKHFNLDPSHRWLRNLIVDGVQTQ
AAAIESGR
>Mature_328_residues
MISITYAGPKRLFVKQLDFNLLRVLEVLLEEQSVTAAASRLHLSQSAVSKQLSKLRETFDDQLFERTAYGLKATPRALQL
APELREVLQKLDQFTRPSTFDPAESQRRFRMHIVETAYSLTYPHFMPKLLKAAPQVSINGHTWSHTSMDMLLRCEIDMGI
ICREWDKRSLLHMNNLPEELGATELIRDYPVCLLRRDHPALKEPWNLDTFLKYRHLQVAFGGLEHWLLDDVLRLDHLQRD
IAVNMTDFNCAMDLCENSDLILCAPRKYIQQMVANYDLVCLDVPVHVEPGAYVLVWHKHFNLDPSHRWLRNLIVDGVQTQ
AAAIESGR

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=295, Percent_Identity=32.2033898305085, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI87081684, Length=305, Percent_Identity=24.9180327868852, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37954; Mature: 37954

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISITYAGPKRLFVKQLDFNLLRVLEVLLEEQSVTAAASRLHLSQSAVSKQLSKLRETFD
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQLFERTAYGLKATPRALQLAPELREVLQKLDQFTRPSTFDPAESQRRFRMHIVETAYSL
HHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
TYPHFMPKLLKAAPQVSINGHTWSHTSMDMLLRCEIDMGIICREWDKRSLLHMNNLPEEL
CCHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEECCCCEEECCCCCCHHHHHCCCHHHH
GATELIRDYPVCLLRRDHPALKEPWNLDTFLKYRHLQVAFGGLEHWLLDDVLRLDHLQRD
CHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IAVNMTDFNCAMDLCENSDLILCAPRKYIQQMVANYDLVCLDVPVHVEPGAYVLVWHKHF
HEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCEEEEECCEEECCCCEEEEEEECC
NLDPSHRWLRNLIVDGVQTQAAAIESGR
CCCHHHHHHHHHHHCCHHHHHHHHCCCC
>Mature Secondary Structure
MISITYAGPKRLFVKQLDFNLLRVLEVLLEEQSVTAAASRLHLSQSAVSKQLSKLRETFD
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQLFERTAYGLKATPRALQLAPELREVLQKLDQFTRPSTFDPAESQRRFRMHIVETAYSL
HHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
TYPHFMPKLLKAAPQVSINGHTWSHTSMDMLLRCEIDMGIICREWDKRSLLHMNNLPEEL
CCHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEECCCCEEECCCCCCHHHHHCCCHHHH
GATELIRDYPVCLLRRDHPALKEPWNLDTFLKYRHLQVAFGGLEHWLLDDVLRLDHLQRD
CHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IAVNMTDFNCAMDLCENSDLILCAPRKYIQQMVANYDLVCLDVPVHVEPGAYVLVWHKHF
HEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCEEEEECCEEECCCCEEEEEEECC
NLDPSHRWLRNLIVDGVQTQAAAIESGR
CCCHHHHHHHHHHHCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA