Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167625208

Identifier: 167625208

GI number: 167625208

Start: 4018011

End: 4020005

Strand: Reverse

Name: 167625208

Synonym: Shal_3296

Alternate gene names: NA

Gene position: 4020005-4018011 (Counterclockwise)

Preceding gene: 167625209

Following gene: 167625207

Centisome position: 76.91

GC content: 43.71

Gene sequence:

>1995_bases
ATGCTCACATTATCTGAGAAAGAGTGTATTGCGTTAATTAATAAAGGCGAATGCTTTCAAGCTGAAGTGGAAGGTGGCTC
ATTTATCGTAAAGATTGATGAGTACTCTCCGGTCGTATGTACCGCGATTCATAATGGTCATCGTTTGCGAGACGACCTGA
AAAAGACCTTCTTGCTAACTAAAGAAGAGCGCTTTTATGAAGAAGATCCTTACACCGATGAAATGCTGTCGTCATTTCCT
ATCGTCTTGATAGGTAATGACTCACGTTTTGAATATGATCTGAATCGCCCTAAGGCCCATTCGACTTATTTCAAGACCGC
GTGGGACAAGCAAGTCTGGCAAAAGCCCCTGAGCACTAAGCAGCGCAGTGAAAGCCACGCTAAGCATCAGTCTTTCTACA
ATGTGTTAAGTGCCCTAATCGCGCGTTTAGAGAAGCAGTTTAAAAACAGTATTGTTTTTGATGTGCACTCTTATAATCAT
CAACGTATTGAAGCCGATACGCCGACTTTTAACATCGGCACGAGCCAGATTGATATCGAACGTTGGGGAGCGACCTGTCA
TCACTTTGAGAAGCAGCTGAGCAAGATGGAGCTGCCTAACCTTGCTGTGCGTGCGGCAACGGATGAAGTCTTTCAAGGTC
GAGGCTATTTAATTGCTCATGTGAATGCGCATTTCGACAACACTTTAGTTCTGCCTGTCGAAGTGAAAAAAGTATTTATG
GATGAGACCTCGGGTGAGCTATATCCGCTGGTGTTAGAAGAGCTAAAAGCAGGCATTAAGCAGGCTATATCAGAAACCGC
CGCATTCTTTATGCGCCGTTTTGGTAAACGTAAGTCGGTGAGAAACGTTGATCTATTATCATCGACTCTATCGCCAGAGA
TCTTATCGCTAGATAAGAGCCTATTTAAGCTGGCTAACAATGTCGCGACACTGAAATATATTAACCCGATTAATATTGCC
AGTGAGCGTAAGAAGTTCTTAGCCCGTAAAGGTGCAGTTGCACCTGAGTTTAGTTATAAGCAGTTAAACCTCAACCCATA
TCAGTTCCGCGAGCAGCTATATAAGTTGCCAGTTGAAAACGTAATGGATGCGGATATTCAGCTGCTTTATCGTCATGTGA
TTGATAACTTGGCGACTAAGATTGACTTGCTATGCTCTATCGGTAACGACGACTTTGTGTATAACTCACTTAAGTATTAC
GGTCAGCCTGATAAAGACGATATAGCTAATGCAGAGTTTTTACTGCGCGCGCCAAATATTGAAGCCGATGACGAAGAGCC
TGTTTATGATGCCGCTCATGCGGTAAAGTCATTCCAAAAACAGGCCGATGACTGGGGCATTAAGTGTAAGGTTGAAAAAT
CATCACGTATCGTTGCTAAGGCGATGGTCGACAGTGAAAGAAACTGTTTGTTGATCAATAAAGATGCAATGTTCACAGGT
AAAGAACTGGTCGCGTTTGCTTACCATGAACTCGGTGTGCATATGCTGACGACCGTGAATGCTAGACGCCAAAAGCTAAG
AGTATTATCGCTTGGTCTTGTGGGTAATACTCATACCCAAGAGGGTGTGGCGATCTACAGCGAATATTGCTCTGGCAACT
TGACCTTGAATCGACTCAAGATCTTGGCTCTGCGCGTTATCGCGGTGAATCTGATGTTAGAGCAGCGTGACTTCTCGATG
ACCTTCCAAACGCTGATGCGCGAATATGGTCAAACAACCGAGCAGGCCTTTATTTTAACTACACGCGTATATCGTGGTGG
TGGTTTCACTAAAGACTTCCTTTACTTAAAAGGCTTTAGAGATATTGTTAATTTAAGTAAGACAACGCCGCTAGATAATT
TGTTAGTCGGTAAAGCGGGTACGCTGGACTTGCCAATTATCAGTGAGATGGTAGAGCGTAATATGCTTGAAAAGCCAGTG
CCTCTATTTGAGTTAAAGCACAAGTCAACGCCAGAAACAGCGGTAATCGATTACTTGGTTTCAGCGATCCGTTAG

Upstream 100 bases:

>100_bases
GTTAAGCTTCAGACTAAAGTTATTGATTTTGTTGAAAGTGTTGTTAATGCCAAAGAGGTGTTAACTCAGAGGCGATCAGA
ATTTAGAAAGGCGATTGACG

Downstream 100 bases:

>100_bases
TCATTATTAACGACGTCTGTAGACGGCATAAAAACGCCTTATTCCTAACGGAGTAAGGCGTTTTTTTATGGCGATTTTAA
GGGTAAAGCTTAGATGGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 664; Mature: 664

Protein sequence:

>664_residues
MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLTKEERFYEEDPYTDEMLSSFP
IVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTKQRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNH
QRIEADTPTFNIGTSQIDIERWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM
DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKSLFKLANNVATLKYINPINIA
SERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVENVMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYY
GQPDKDDIANAEFLLRAPNIEADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG
KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLKILALRVIAVNLMLEQRDFSM
TFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFRDIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPV
PLFELKHKSTPETAVIDYLVSAIR

Sequences:

>Translated_664_residues
MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLTKEERFYEEDPYTDEMLSSFP
IVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTKQRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNH
QRIEADTPTFNIGTSQIDIERWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM
DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKSLFKLANNVATLKYINPINIA
SERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVENVMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYY
GQPDKDDIANAEFLLRAPNIEADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG
KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLKILALRVIAVNLMLEQRDFSM
TFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFRDIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPV
PLFELKHKSTPETAVIDYLVSAIR
>Mature_664_residues
MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLTKEERFYEEDPYTDEMLSSFP
IVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTKQRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNH
QRIEADTPTFNIGTSQIDIERWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM
DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKSLFKLANNVATLKYINPINIA
SERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVENVMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYY
GQPDKDDIANAEFLLRAPNIEADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG
KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLKILALRVIAVNLMLEQRDFSM
TFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFRDIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPV
PLFELKHKSTPETAVIDYLVSAIR

Specific function: Unknown

COG id: COG3930

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75760; Mature: 75760

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLT
CCCCCCCHHHEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHEEC
KEERFYEEDPYTDEMLSSFPIVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTK
CHHHHCCCCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
QRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNHQRIEADTPTFNIGTSQIDIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCEEECCCCEEEHH
RWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM
HHCCHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHH
DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHH
LFKLANNVATLKYINPINIASERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVEN
HHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHCCHHH
VMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYYGQPDKDDIANAEFLLRAPNI
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHHHHHCCCCCCCCCCCCEEEEECCCC
EADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCC
KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLK
HHHHHHHHHHHCHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHH
ILALRVIAVNLMLEQRDFSMTFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCCHHHHHHHHHH
DIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPVPLFELKHKSTPETAVIDYLV
HHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH
SAIR
HHCC
>Mature Secondary Structure
MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLT
CCCCCCCHHHEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHEEC
KEERFYEEDPYTDEMLSSFPIVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTK
CHHHHCCCCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
QRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNHQRIEADTPTFNIGTSQIDIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCEEECCCCEEEHH
RWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM
HHCCHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHH
DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHH
LFKLANNVATLKYINPINIASERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVEN
HHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHCCHHH
VMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYYGQPDKDDIANAEFLLRAPNI
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHHHHHCCCCCCCCCCCCEEEEECCCC
EADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCC
KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLK
HHHHHHHHHHHCHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHH
ILALRVIAVNLMLEQRDFSMTFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCCHHHHHHHHHH
DIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPVPLFELKHKSTPETAVIDYLV
HHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH
SAIR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA