| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625208
Identifier: 167625208
GI number: 167625208
Start: 4018011
End: 4020005
Strand: Reverse
Name: 167625208
Synonym: Shal_3296
Alternate gene names: NA
Gene position: 4020005-4018011 (Counterclockwise)
Preceding gene: 167625209
Following gene: 167625207
Centisome position: 76.91
GC content: 43.71
Gene sequence:
>1995_bases ATGCTCACATTATCTGAGAAAGAGTGTATTGCGTTAATTAATAAAGGCGAATGCTTTCAAGCTGAAGTGGAAGGTGGCTC ATTTATCGTAAAGATTGATGAGTACTCTCCGGTCGTATGTACCGCGATTCATAATGGTCATCGTTTGCGAGACGACCTGA AAAAGACCTTCTTGCTAACTAAAGAAGAGCGCTTTTATGAAGAAGATCCTTACACCGATGAAATGCTGTCGTCATTTCCT ATCGTCTTGATAGGTAATGACTCACGTTTTGAATATGATCTGAATCGCCCTAAGGCCCATTCGACTTATTTCAAGACCGC GTGGGACAAGCAAGTCTGGCAAAAGCCCCTGAGCACTAAGCAGCGCAGTGAAAGCCACGCTAAGCATCAGTCTTTCTACA ATGTGTTAAGTGCCCTAATCGCGCGTTTAGAGAAGCAGTTTAAAAACAGTATTGTTTTTGATGTGCACTCTTATAATCAT CAACGTATTGAAGCCGATACGCCGACTTTTAACATCGGCACGAGCCAGATTGATATCGAACGTTGGGGAGCGACCTGTCA TCACTTTGAGAAGCAGCTGAGCAAGATGGAGCTGCCTAACCTTGCTGTGCGTGCGGCAACGGATGAAGTCTTTCAAGGTC GAGGCTATTTAATTGCTCATGTGAATGCGCATTTCGACAACACTTTAGTTCTGCCTGTCGAAGTGAAAAAAGTATTTATG GATGAGACCTCGGGTGAGCTATATCCGCTGGTGTTAGAAGAGCTAAAAGCAGGCATTAAGCAGGCTATATCAGAAACCGC CGCATTCTTTATGCGCCGTTTTGGTAAACGTAAGTCGGTGAGAAACGTTGATCTATTATCATCGACTCTATCGCCAGAGA TCTTATCGCTAGATAAGAGCCTATTTAAGCTGGCTAACAATGTCGCGACACTGAAATATATTAACCCGATTAATATTGCC AGTGAGCGTAAGAAGTTCTTAGCCCGTAAAGGTGCAGTTGCACCTGAGTTTAGTTATAAGCAGTTAAACCTCAACCCATA TCAGTTCCGCGAGCAGCTATATAAGTTGCCAGTTGAAAACGTAATGGATGCGGATATTCAGCTGCTTTATCGTCATGTGA TTGATAACTTGGCGACTAAGATTGACTTGCTATGCTCTATCGGTAACGACGACTTTGTGTATAACTCACTTAAGTATTAC GGTCAGCCTGATAAAGACGATATAGCTAATGCAGAGTTTTTACTGCGCGCGCCAAATATTGAAGCCGATGACGAAGAGCC TGTTTATGATGCCGCTCATGCGGTAAAGTCATTCCAAAAACAGGCCGATGACTGGGGCATTAAGTGTAAGGTTGAAAAAT CATCACGTATCGTTGCTAAGGCGATGGTCGACAGTGAAAGAAACTGTTTGTTGATCAATAAAGATGCAATGTTCACAGGT AAAGAACTGGTCGCGTTTGCTTACCATGAACTCGGTGTGCATATGCTGACGACCGTGAATGCTAGACGCCAAAAGCTAAG AGTATTATCGCTTGGTCTTGTGGGTAATACTCATACCCAAGAGGGTGTGGCGATCTACAGCGAATATTGCTCTGGCAACT TGACCTTGAATCGACTCAAGATCTTGGCTCTGCGCGTTATCGCGGTGAATCTGATGTTAGAGCAGCGTGACTTCTCGATG ACCTTCCAAACGCTGATGCGCGAATATGGTCAAACAACCGAGCAGGCCTTTATTTTAACTACACGCGTATATCGTGGTGG TGGTTTCACTAAAGACTTCCTTTACTTAAAAGGCTTTAGAGATATTGTTAATTTAAGTAAGACAACGCCGCTAGATAATT TGTTAGTCGGTAAAGCGGGTACGCTGGACTTGCCAATTATCAGTGAGATGGTAGAGCGTAATATGCTTGAAAAGCCAGTG CCTCTATTTGAGTTAAAGCACAAGTCAACGCCAGAAACAGCGGTAATCGATTACTTGGTTTCAGCGATCCGTTAG
Upstream 100 bases:
>100_bases GTTAAGCTTCAGACTAAAGTTATTGATTTTGTTGAAAGTGTTGTTAATGCCAAAGAGGTGTTAACTCAGAGGCGATCAGA ATTTAGAAAGGCGATTGACG
Downstream 100 bases:
>100_bases TCATTATTAACGACGTCTGTAGACGGCATAAAAACGCCTTATTCCTAACGGAGTAAGGCGTTTTTTTATGGCGATTTTAA GGGTAAAGCTTAGATGGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 664; Mature: 664
Protein sequence:
>664_residues MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLTKEERFYEEDPYTDEMLSSFP IVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTKQRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNH QRIEADTPTFNIGTSQIDIERWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKSLFKLANNVATLKYINPINIA SERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVENVMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYY GQPDKDDIANAEFLLRAPNIEADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLKILALRVIAVNLMLEQRDFSM TFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFRDIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPV PLFELKHKSTPETAVIDYLVSAIR
Sequences:
>Translated_664_residues MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLTKEERFYEEDPYTDEMLSSFP IVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTKQRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNH QRIEADTPTFNIGTSQIDIERWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKSLFKLANNVATLKYINPINIA SERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVENVMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYY GQPDKDDIANAEFLLRAPNIEADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLKILALRVIAVNLMLEQRDFSM TFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFRDIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPV PLFELKHKSTPETAVIDYLVSAIR >Mature_664_residues MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLTKEERFYEEDPYTDEMLSSFP IVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTKQRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNH QRIEADTPTFNIGTSQIDIERWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKSLFKLANNVATLKYINPINIA SERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVENVMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYY GQPDKDDIANAEFLLRAPNIEADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLKILALRVIAVNLMLEQRDFSM TFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFRDIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPV PLFELKHKSTPETAVIDYLVSAIR
Specific function: Unknown
COG id: COG3930
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75760; Mature: 75760
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLT CCCCCCCHHHEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHEEC KEERFYEEDPYTDEMLSSFPIVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTK CHHHHCCCCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH QRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNHQRIEADTPTFNIGTSQIDIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCEEECCCCEEEHH RWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM HHCCHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHH DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHH LFKLANNVATLKYINPINIASERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVEN HHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHCCHHH VMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYYGQPDKDDIANAEFLLRAPNI HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHHHHHCCCCCCCCCCCCEEEEECCCC EADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCC KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLK HHHHHHHHHHHCHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHH ILALRVIAVNLMLEQRDFSMTFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFR HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCCHHHHHHHHHH DIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPVPLFELKHKSTPETAVIDYLV HHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH SAIR HHCC >Mature Secondary Structure MLTLSEKECIALINKGECFQAEVEGGSFIVKIDEYSPVVCTAIHNGHRLRDDLKKTFLLT CCCCCCCHHHEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHEEC KEERFYEEDPYTDEMLSSFPIVLIGNDSRFEYDLNRPKAHSTYFKTAWDKQVWQKPLSTK CHHHHCCCCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH QRSESHAKHQSFYNVLSALIARLEKQFKNSIVFDVHSYNHQRIEADTPTFNIGTSQIDIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCEEECCCCEEEHH RWGATCHHFEKQLSKMELPNLAVRAATDEVFQGRGYLIAHVNAHFDNTLVLPVEVKKVFM HHCCHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHH DETSGELYPLVLEELKAGIKQAISETAAFFMRRFGKRKSVRNVDLLSSTLSPEILSLDKS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHH LFKLANNVATLKYINPINIASERKKFLARKGAVAPEFSYKQLNLNPYQFREQLYKLPVEN HHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHCCHHH VMDADIQLLYRHVIDNLATKIDLLCSIGNDDFVYNSLKYYGQPDKDDIANAEFLLRAPNI HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHHHHHCCCCCCCCCCCCEEEEECCCC EADDEEPVYDAAHAVKSFQKQADDWGIKCKVEKSSRIVAKAMVDSERNCLLINKDAMFTG CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCC KELVAFAYHELGVHMLTTVNARRQKLRVLSLGLVGNTHTQEGVAIYSEYCSGNLTLNRLK HHHHHHHHHHHCHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHH ILALRVIAVNLMLEQRDFSMTFQTLMREYGQTTEQAFILTTRVYRGGGFTKDFLYLKGFR HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCCHHHHHHHHHH DIVNLSKTTPLDNLLVGKAGTLDLPIISEMVERNMLEKPVPLFELKHKSTPETAVIDYLV HHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH SAIR HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA