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The map label for this gene is sirB1 [H]

Identifier: 167625120

GI number: 167625120

Start: 3912689

End: 3913477

Strand: Reverse

Name: sirB1 [H]

Synonym: Shal_3208

Alternate gene names: 167625120

Gene position: 3913477-3912689 (Counterclockwise)

Preceding gene: 167625121

Following gene: 167625119

Centisome position: 74.87

GC content: 42.33

Gene sequence:

>789_bases
ATGGCTGATTTCAAAATAAACGACTCGATCCAACTTCCTGAGACTGCCTTAGATATTGCCCAGCATTTAGGTTTTTCAAA
GGTTAAGAATGCTAACTGGGCATGGCTAGAATTAGCCGGGTCTGTACTCAGTTTCTATGTTGTTGATAGGCATGAACGAT
TAAAGGGACTGCTTAACTGGTTCTATAATGATTTAGGTTTTTGCCCGCGTGAGGACTATTACAGTGCCGAGGCCGCCGAT
CTCGGTAAGTGTTTAACCTCGAAGCAAGGTAATAGCACAACGTTAGCGACCGTATTAATGTTATTAGCAAAGCAGTTAGA
TCTTAAATTGGATTTACTGCTATTGCCCGGCCAAACCGTGTTATGTAGTCAAATCGATGATGAAGTTCGCTATATCGATC
CACTTACAGGCACAGAGCTGACCAAACATCAGTTACATGTGTTTGTGCGTGGCGAGCTAGGTAATGGGGCTAGTTTTAAA
CCTAGCTATTTAAAGCCTGCAAGTATTAAGCGAATTATTTCTAGAATGCTACATGAGATGAAAGCGGGCAGCATCTTGGC
TCACAAATTTGTGCCTGCGATGGAATGCTGTAACTTGCTGCTTCAATGGCATAGTGATGACTTGAATCTAAACCGAGAGC
GTGCCTTTATTGCACAGCAATTGGGTTGTATTAGTGTTGCCGCGGCAGACTTGACTCACTTTGTAGAAAACAGTCCGCAT
GATCCGGTGATTGAACTGGTGAAAATGCAATTGAAAGAACTTAAAGAGGAAGTTGAAACTTTCCATTAA

Upstream 100 bases:

>100_bases
GAGGTACTTTATTTAAAGTGTTTGCAGCCTTGGGCGCAATCGGTTGGGTGGTTTACGCGGCTAAACTGGCAATGTTTAAG
CAAGCGGTGTTACTGGGTTA

Downstream 100 bases:

>100_bases
GAATCACAATAGGGCCTTAATGGCCCTTTTGTGTTGATGTAGCCGCTTCGAGTCAGGGCAAAATATTTAAAATAGAGCGC
AACGCTTGAAAAAGTATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MADFKINDSIQLPETALDIAQHLGFSKVKNANWAWLELAGSVLSFYVVDRHERLKGLLNWFYNDLGFCPREDYYSAEAAD
LGKCLTSKQGNSTTLATVLMLLAKQLDLKLDLLLLPGQTVLCSQIDDEVRYIDPLTGTELTKHQLHVFVRGELGNGASFK
PSYLKPASIKRIISRMLHEMKAGSILAHKFVPAMECCNLLLQWHSDDLNLNRERAFIAQQLGCISVAAADLTHFVENSPH
DPVIELVKMQLKELKEEVETFH

Sequences:

>Translated_262_residues
MADFKINDSIQLPETALDIAQHLGFSKVKNANWAWLELAGSVLSFYVVDRHERLKGLLNWFYNDLGFCPREDYYSAEAAD
LGKCLTSKQGNSTTLATVLMLLAKQLDLKLDLLLLPGQTVLCSQIDDEVRYIDPLTGTELTKHQLHVFVRGELGNGASFK
PSYLKPASIKRIISRMLHEMKAGSILAHKFVPAMECCNLLLQWHSDDLNLNRERAFIAQQLGCISVAAADLTHFVENSPH
DPVIELVKMQLKELKEEVETFH
>Mature_261_residues
ADFKINDSIQLPETALDIAQHLGFSKVKNANWAWLELAGSVLSFYVVDRHERLKGLLNWFYNDLGFCPREDYYSAEAADL
GKCLTSKQGNSTTLATVLMLLAKQLDLKLDLLLLPGQTVLCSQIDDEVRYIDPLTGTELTKHQLHVFVRGELGNGASFKP
SYLKPASIKRIISRMLHEMKAGSILAHKFVPAMECCNLLLQWHSDDLNLNRERAFIAQQLGCISVAAADLTHFVENSPHD
PVIELVKMQLKELKEEVETFH

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=206, Percent_Identity=32.0388349514563, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29522; Mature: 29391

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADFKINDSIQLPETALDIAQHLGFSKVKNANWAWLELAGSVLSFYVVDRHERLKGLLNW
CCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYNDLGFCPREDYYSAEAADLGKCLTSKQGNSTTLATVLMLLAKQLDLKLDLLLLPGQTV
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCH
LCSQIDDEVRYIDPLTGTELTKHQLHVFVRGELGNGASFKPSYLKPASIKRIISRMLHEM
HHHHHCCHHHEECCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
KAGSILAHKFVPAMECCNLLLQWHSDDLNLNRERAFIAQQLGCISVAAADLTHFVENSPH
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPVIELVKMQLKELKEEVETFH
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADFKINDSIQLPETALDIAQHLGFSKVKNANWAWLELAGSVLSFYVVDRHERLKGLLNW
CCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYNDLGFCPREDYYSAEAADLGKCLTSKQGNSTTLATVLMLLAKQLDLKLDLLLLPGQTV
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCH
LCSQIDDEVRYIDPLTGTELTKHQLHVFVRGELGNGASFKPSYLKPASIKRIISRMLHEM
HHHHHCCHHHEECCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
KAGSILAHKFVPAMECCNLLLQWHSDDLNLNRERAFIAQQLGCISVAAADLTHFVENSPH
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPVIELVKMQLKELKEEVETFH
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]