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The map label for this gene is ychQ [C]

Identifier: 167625121

GI number: 167625121

Start: 3913477

End: 3913872

Strand: Reverse

Name: ychQ [C]

Synonym: Shal_3209

Alternate gene names: 167625121

Gene position: 3913872-3913477 (Counterclockwise)

Preceding gene: 167625122

Following gene: 167625120

Centisome position: 74.88

GC content: 42.68

Gene sequence:

>396_bases
ATGGAAACTTTTTACAGTTTATACCCTGCGTTTAAGCACCTGCATATGACGCTTATCGCGACTAGCGTATTGTTTTTCTT
AGTCCGTTTTGTACTGCATTTACGTAAGTCACCCGTAATGGAAAAGAAAGTGATTAAGATAGCGCCTCACGTTATCGATA
CTTTATTACTGCTCTCTGGTGTGATCTTATGCTTCTCAATTAACCAGTATCCATTCGTCGACCCTTGGATGACTGAAAAG
CTTGGTGCCGTTGCGGCTTACATCATATTGGCAACTATAGCGCTTAAAGCTAACCGAGGTACTTTATTTAAAGTGTTTGC
AGCCTTGGGCGCAATCGGTTGGGTGGTTTACGCGGCTAAACTGGCAATGTTTAAGCAAGCGGTGTTACTGGGTTAA

Upstream 100 bases:

>100_bases
AAACTTTGTGCAGTTCTGCTTGTTGTCATCGCCGGATATTGGTTATGGATTAAGGTATGGGGTACACTAGCCGCCATTAT
CGGCTAATAGATCTTTATTC

Downstream 100 bases:

>100_bases
TGGCTGATTTCAAAATAAACGACTCGATCCAACTTCCTGAGACTGCCTTAGATATTGCCCAGCATTTAGGTTTTTCAAAG
GTTAAGAATGCTAACTGGGC

Product: invasion gene expression up-regulator SirB

Products: NA

Alternate protein names: Transcriptional Regulator; SirB Family Protein; Protein SirB Invasion Gene Expression Up-Regulator; Invasion Gene Expression Up-Regulator

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
METFYSLYPAFKHLHMTLIATSVLFFLVRFVLHLRKSPVMEKKVIKIAPHVIDTLLLLSGVILCFSINQYPFVDPWMTEK
LGAVAAYIILATIALKANRGTLFKVFAALGAIGWVVYAAKLAMFKQAVLLG

Sequences:

>Translated_131_residues
METFYSLYPAFKHLHMTLIATSVLFFLVRFVLHLRKSPVMEKKVIKIAPHVIDTLLLLSGVILCFSINQYPFVDPWMTEK
LGAVAAYIILATIALKANRGTLFKVFAALGAIGWVVYAAKLAMFKQAVLLG
>Mature_131_residues
METFYSLYPAFKHLHMTLIATSVLFFLVRFVLHLRKSPVMEKKVIKIAPHVIDTLLLLSGVILCFSINQYPFVDPWMTEK
LGAVAAYIILATIALKANRGTLFKVFAALGAIGWVVYAAKLAMFKQAVLLG

Specific function: Unknown

COG id: COG3094

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14630; Mature: 14630

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METFYSLYPAFKHLHMTLIATSVLFFLVRFVLHLRKSPVMEKKVIKIAPHVIDTLLLLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VILCFSINQYPFVDPWMTEKLGAVAAYIILATIALKANRGTLFKVFAALGAIGWVVYAAK
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LAMFKQAVLLG
HHHHHHHHHCC
>Mature Secondary Structure
METFYSLYPAFKHLHMTLIATSVLFFLVRFVLHLRKSPVMEKKVIKIAPHVIDTLLLLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VILCFSINQYPFVDPWMTEKLGAVAAYIILATIALKANRGTLFKVFAALGAIGWVVYAAK
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LAMFKQAVLLG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA