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The map label for this gene is yjcL [H]

Identifier: 167625119

GI number: 167625119

Start: 3911215

End: 3912483

Strand: Reverse

Name: yjcL [H]

Synonym: Shal_3207

Alternate gene names: 167625119

Gene position: 3912483-3911215 (Counterclockwise)

Preceding gene: 167625120

Following gene: 167625118

Centisome position: 74.85

GC content: 46.65

Gene sequence:

>1269_bases
ATGAGTAGTACAGATTCAGTGACCAGCGCTCTGGTGACGAATGACGCTACCGCATTAGGTATTTTGGCGGTGGTGCTTGG
TTTTGTATTTTATACCAGTAATAGCAGTAATGCGTTTTGGAAGAAGTTCTATACTTACGTTCCCGCATTGCTGATGTGTT
ATTTCTTACCATCGTTATTAAATACTTTCGATATTATCGATGGTAATACGTCGCAGCTGTATTTTGTGGCGTCACGATAC
CTGCTGCCAGCCTGCTTAGTGCTACTGATTTTGAGTGTCGACTTAAAGGCGATTCTCTCTTTAGGGCCGAAGGCGATTAT
CATGTTCCTAACCGGAACCGTGGGAATTGTGATCGGTGGCCCGATTGCGCTGCTTATCGTCTCGGCGATTAACCCCGAGA
TACTCAATGTGACTGGCCCCGATGCGGTTTGGCGTGGTATGACAACTCTTGCTGGTAGCTGGATTGGCGGCGGTGCCAAT
CAGGCTGCGATGAAAGAAATTTATGATGTAGGCGGTGATATATTCTCAATCATGGTCACGGTGGACGTTATCGTGGCGAA
TATCTGGATGGCAGTGCTGCTGTTTATGGCATCAAAGGCTAAAGAGATCGATGCTAAAACTGGCGCTGACACGACTGCAC
TTGAAGCTCTGAAAGATAAAGTTGAAAAGTATCATGCCGAGAATGCGCGTATTCCTAGCTTGAGCGACTTGATGATGATT
GTCGCAATAGGTTTTGGTGTTACCGGCCTTGCTCATATCGTCGCCGATTTTTTAGGGCCATTTTTTGAAACCAATTATCC
GTGGACTCGAGATTATAGCCTAACCTCAAAGTTCTTCTGGTTAATTGTCACGGTAACAACGATAGGCTTAATCTTGTCGT
TTACACGAGTACGACATATCGAAGCTGCGGGTGCTTCAAAAGTCGCGACAGCATTCTTGTACATTCTTGTAGCCACCATT
GGTCTGCATATGGATGTTTCAAAGCTGGCAGATCCTGATAACCTTTGGTACTTTGCCATCGGTATCATTTGGATGTTAGT
ACATGCTAGCTTCATGTTAATAGTGGCCAAGATTATTAAGGCGCCGCTGTTCTATATGGCGGTGGGTAGCCAAGCCAATG
TTGGCGGCGCGGCATCAGCCCCCGTTGTGGCAGCAGCATTCCACCCAGCGTTAGCGCCAGTAGGTGTGCTATTAGCGGTA
TTGGGCTATGCTTTAGGCACCTATATGGCATGGATCTGTGGTCAGATTTTACAAGCTGTAGCGAGTTAG

Upstream 100 bases:

>100_bases
GCCGTTAAAAACAAAAATAAGATTAAAAAGTAATACCAACAAATTGAATAGCAAGAATAATAATTAGGCAAAAAATTGCC
AATGTTAAGGGGATAGGATC

Downstream 100 bases:

>100_bases
CACGACAGCGAAAACTTAGTTGATTAATGCCAAGGCATCGGCCTTGGCTCACGAAGAGAGAAGAGATTGATGAGCAATAA
AATCATTAGTTTAGGTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MSSTDSVTSALVTNDATALGILAVVLGFVFYTSNSSNAFWKKFYTYVPALLMCYFLPSLLNTFDIIDGNTSQLYFVASRY
LLPACLVLLILSVDLKAILSLGPKAIIMFLTGTVGIVIGGPIALLIVSAINPEILNVTGPDAVWRGMTTLAGSWIGGGAN
QAAMKEIYDVGGDIFSIMVTVDVIVANIWMAVLLFMASKAKEIDAKTGADTTALEALKDKVEKYHAENARIPSLSDLMMI
VAIGFGVTGLAHIVADFLGPFFETNYPWTRDYSLTSKFFWLIVTVTTIGLILSFTRVRHIEAAGASKVATAFLYILVATI
GLHMDVSKLADPDNLWYFAIGIIWMLVHASFMLIVAKIIKAPLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAV
LGYALGTYMAWICGQILQAVAS

Sequences:

>Translated_422_residues
MSSTDSVTSALVTNDATALGILAVVLGFVFYTSNSSNAFWKKFYTYVPALLMCYFLPSLLNTFDIIDGNTSQLYFVASRY
LLPACLVLLILSVDLKAILSLGPKAIIMFLTGTVGIVIGGPIALLIVSAINPEILNVTGPDAVWRGMTTLAGSWIGGGAN
QAAMKEIYDVGGDIFSIMVTVDVIVANIWMAVLLFMASKAKEIDAKTGADTTALEALKDKVEKYHAENARIPSLSDLMMI
VAIGFGVTGLAHIVADFLGPFFETNYPWTRDYSLTSKFFWLIVTVTTIGLILSFTRVRHIEAAGASKVATAFLYILVATI
GLHMDVSKLADPDNLWYFAIGIIWMLVHASFMLIVAKIIKAPLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAV
LGYALGTYMAWICGQILQAVAS
>Mature_421_residues
SSTDSVTSALVTNDATALGILAVVLGFVFYTSNSSNAFWKKFYTYVPALLMCYFLPSLLNTFDIIDGNTSQLYFVASRYL
LPACLVLLILSVDLKAILSLGPKAIIMFLTGTVGIVIGGPIALLIVSAINPEILNVTGPDAVWRGMTTLAGSWIGGGANQ
AAMKEIYDVGGDIFSIMVTVDVIVANIWMAVLLFMASKAKEIDAKTGADTTALEALKDKVEKYHAENARIPSLSDLMMIV
AIGFGVTGLAHIVADFLGPFFETNYPWTRDYSLTSKFFWLIVTVTTIGLILSFTRVRHIEAAGASKVATAFLYILVATIG
LHMDVSKLADPDNLWYFAIGIIWMLVHASFMLIVAKIIKAPLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAVL
GYALGTYMAWICGQILQAVAS

Specific function: Unknown

COG id: COG5505

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008537 [H]

Pfam domain/function: PF05684 DUF819 [H]

EC number: NA

Molecular weight: Translated: 45065; Mature: 44934

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTDSVTSALVTNDATALGILAVVLGFVFYTSNSSNAFWKKFYTYVPALLMCYFLPSLL
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NTFDIIDGNTSQLYFVASRYLLPACLVLLILSVDLKAILSLGPKAIIMFLTGTVGIVIGG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
PIALLIVSAINPEILNVTGPDAVWRGMTTLAGSWIGGGANQAAMKEIYDVGGDIFSIMVT
HHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
VDVIVANIWMAVLLFMASKAKEIDAKTGADTTALEALKDKVEKYHAENARIPSLSDLMMI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VAIGFGVTGLAHIVADFLGPFFETNYPWTRDYSLTSKFFWLIVTVTTIGLILSFTRVRHI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAGASKVATAFLYILVATIGLHMDVSKLADPDNLWYFAIGIIWMLVHASFMLIVAKIIK
HHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
APLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAVLGYALGTYMAWICGQILQAV
CCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AS
CC
>Mature Secondary Structure 
SSTDSVTSALVTNDATALGILAVVLGFVFYTSNSSNAFWKKFYTYVPALLMCYFLPSLL
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NTFDIIDGNTSQLYFVASRYLLPACLVLLILSVDLKAILSLGPKAIIMFLTGTVGIVIGG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
PIALLIVSAINPEILNVTGPDAVWRGMTTLAGSWIGGGANQAAMKEIYDVGGDIFSIMVT
HHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
VDVIVANIWMAVLLFMASKAKEIDAKTGADTTALEALKDKVEKYHAENARIPSLSDLMMI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VAIGFGVTGLAHIVADFLGPFFETNYPWTRDYSLTSKFFWLIVTVTTIGLILSFTRVRHI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAGASKVATAFLYILVATIGLHMDVSKLADPDNLWYFAIGIIWMLVHASFMLIVAKIIK
HHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
APLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAVLGYALGTYMAWICGQILQAV
CCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]