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The map label for this gene is deoC

Identifier: 167625048

GI number: 167625048

Start: 3827209

End: 3827982

Strand: Reverse

Name: deoC

Synonym: Shal_3136

Alternate gene names: 167625048

Gene position: 3827982-3827209 (Counterclockwise)

Preceding gene: 167625049

Following gene: 167625047

Centisome position: 73.24

GC content: 48.45

Gene sequence:

>774_bases
ATGAGCGACTTAAAAAAAGCAGCACAACAAGCCATTAGTCTAATGGATCTTACTACTCTAAATGACGATGACACAGATCA
AAAAGTGATCGAACTATGTCATAAAGCTAAGACGCCTGCTGGTGACACTGCTGCTATCTGTATTTACCCTCGCTTTATTC
CTATTGCGCGCAAAACCCTAAACGAAATTGGTGGCGACGATATTAAAATCGCTACGGTAACTAACTTCCCGCACGGTAAC
GACGATATCGCTATCGCGGTATTAGAAACTCGCGCAGCAGTTGCATACGGCGCCGACGAAGTCGACGTAGTGTTCCCATA
CCGCGCACTAATGGAAGGCAATGAAACTGTAGGCTTTGAGCTTGTTAAGGCGTGTAAAGAAGCCTGTGGCGAAGACACTA
TCCTTAAGGTGATCATCGAGTCTGGCGTGTTAGCCGATCCTGCTCTTATTCGTAAAGCATCTGAGCTATCTATCGATGCG
GGCGCAGACTTCATCAAGACCTCTACTGGTAAAGTTGCTGTTAACGCAACCCTTGAAGCCGCTGAGATCATGATGACTGT
GATCAGCGAAAAGAACCCTAAAGTTGGCTTCAAGCCTGCTGGCGGCGTAAAAGACGCTGCGGCAGCTGCAGAGTTTTTAG
GTGTTGCGGCGCGTCTTCTTGGTGATGACTGGGCGACTCCTGCGACATTCCGTTTCGGTGCTTCGAGCCTTTTGACTAAC
CTGCTGCATACGCTTGAGCTAGCTGACGCACCACAAGGTGCACAAGGTTACTAA

Upstream 100 bases:

>100_bases
CCCGGCCCATAACTATAATCAAAATAAGCCAGTTCAAGGCATCGCCGTGCGATAATTTTCTGTTTTAATTAATTATTTGA
ATCTTTCTCGGAGAGCTATT

Downstream 100 bases:

>100_bases
TCTTTACTGATTAAGCTTGTTGTTAAGTGTGATCTAAATCTAATTAGGTGTATCAAAAGTCCGTTAGTATGTAACAATAT
TACGGCTTTTGATTCACTTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAGDTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFELVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDA
GADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAGGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
LLHTLELADAPQGAQGY

Sequences:

>Translated_257_residues
MSDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAGDTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFELVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDA
GADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAGGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
LLHTLELADAPQGAQGY
>Mature_256_residues
SDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAGDTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFELVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDAG
ADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAGGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTNL
LHTLELADAPQGAQGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=251, Percent_Identity=37.4501992031873, Blast_Score=154, Evalue=6e-38,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=68.2203389830508, Blast_Score=314, Evalue=5e-87,
Organism=Caenorhabditis elegans, GI17533015, Length=251, Percent_Identity=41.0358565737052, Blast_Score=157, Evalue=5e-39,
Organism=Drosophila melanogaster, GI19922098, Length=256, Percent_Identity=35.9375, Blast_Score=130, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_SHEHH (B0TQ91)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001675342.1
- ProteinModelPortal:   B0TQ91
- SMR:   B0TQ91
- GeneID:   5905585
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_3136
- HOGENOM:   HBG636421
- OMA:   CKEACGD
- ProtClustDB:   PRK05283
- BioCyc:   SHAL458817:SHAL_3136-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00592
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 27082; Mature: 26951

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: ACT_SITE 166-166 ACT_SITE 198-198

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAGDTAAICIYPRFIPIARKTL
CCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH
NEIGGDDIKIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDAGADFIKTSTGKVAVNATLEA
HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEHHHH
AEIMMTVISEKNPKVGFKPAGGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
LLHTLELADAPQGAQGY
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAGDTAAICIYPRFIPIARKTL
CHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH
NEIGGDDIKIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDAGADFIKTSTGKVAVNATLEA
HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEHHHH
AEIMMTVISEKNPKVGFKPAGGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
LLHTLELADAPQGAQGY
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA