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The map label for this gene is ompK [H]

Identifier: 167625049

GI number: 167625049

Start: 3828561

End: 3829421

Strand: Reverse

Name: ompK [H]

Synonym: Shal_3137

Alternate gene names: 167625049

Gene position: 3829421-3828561 (Counterclockwise)

Preceding gene: 167625050

Following gene: 167625048

Centisome position: 73.26

GC content: 45.76

Gene sequence:

>861_bases
ATGAAAAACGTTAAAACTTTAGCACTAGCTGCTACTGCTGTTGCTGCAATGTCTGCACCTACTTTCGCTGCTGATCGTAC
TGACCTACGCTCTGGCGATTACAGCTGGATGCAGTTCAACGCAATGTACGCTGTAAATGAACTTCCACGTTCAGATGCTG
ATGACGGCGGACACGACTACCTAGAGATGGAATTCGGCGGCCGTGCTGGCATCGTTGATCTATACGGTTATGTTGACGTG
TTCAACCTAACGAACAGCAGCTCAGGCGACAAAGGTGCTGGTAAGAGCAAGATGTTCATGAAGTTTGCTCCTCGTTTCTC
TATCGATGCGATGACTGGCTGGGATCTTTCTGCTGGTCCAATCCAAGAAGTTTACTTCTCTACTCTATTCAACTGGGGTG
GCGGAGCAATCAGTGGTGTAGATGCTGATGGTAATGAGTATGGCGGCGACGTTAACATGTCTTTCTGGGGTCTTGGTGCT
GACGTTATGGTCCCATGGTTAGGTAAGACTGGCATGAACCTTTATGCTACTTACGACATGAACGCTAAAGACTGGAACGG
TTACCAGTTTTCTATGAACTGGTTCAAGCCAGTAATGAACTTCGATAACGGTTCATTTGTTTCTTTCCAAGGTTATGTTG
ATTACCAGTTCGGTGCTGACGCAGTTGATGACATGTTTGTTCCTACTACTTCAAGTGGTGGCGCTGCATACTTCGGTCTA
CACTGGCACTCAGAGAACTACGCATTGGGTTATGGTCTAAAAGCATACCAAGACGTATATCTAGTTAAAGATAATGGTGG
CATCGTAGGTCTAGAATCTACTGGTTTCGCACATTACTTCACTGCTACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
ATGTTTAGCATAAATAAAGTAAAATGCGGCACCATAAAAAAGAAACGCTGACTCTTCAATAAAGAGGGGCGGCAAACCAT
AAATAAAAATGGGGTTGATG

Downstream 100 bases:

>100_bases
GCATCGCTTAAAACACGTTAAGTATCTGTTAGAGCCGCGAATTTCGCGGCTCTAATTAAATTCTACAAACTGCAAATTTC
GCTCTTATTTTTTATTTCAT

Product: nucleoside-specific channel-forming protein Tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKNVKTLALAATAVAAMSAPTFAADRTDLRSGDYSWMQFNAMYAVNELPRSDADDGGHDYLEMEFGGRAGIVDLYGYVDV
FNLTNSSSGDKGAGKSKMFMKFAPRFSIDAMTGWDLSAGPIQEVYFSTLFNWGGGAISGVDADGNEYGGDVNMSFWGLGA
DVMVPWLGKTGMNLYATYDMNAKDWNGYQFSMNWFKPVMNFDNGSFVSFQGYVDYQFGADAVDDMFVPTTSSGGAAYFGL
HWHSENYALGYGLKAYQDVYLVKDNGGIVGLESTGFAHYFTATYKF

Sequences:

>Translated_286_residues
MKNVKTLALAATAVAAMSAPTFAADRTDLRSGDYSWMQFNAMYAVNELPRSDADDGGHDYLEMEFGGRAGIVDLYGYVDV
FNLTNSSSGDKGAGKSKMFMKFAPRFSIDAMTGWDLSAGPIQEVYFSTLFNWGGGAISGVDADGNEYGGDVNMSFWGLGA
DVMVPWLGKTGMNLYATYDMNAKDWNGYQFSMNWFKPVMNFDNGSFVSFQGYVDYQFGADAVDDMFVPTTSSGGAAYFGL
HWHSENYALGYGLKAYQDVYLVKDNGGIVGLESTGFAHYFTATYKF
>Mature_286_residues
MKNVKTLALAATAVAAMSAPTFAADRTDLRSGDYSWMQFNAMYAVNELPRSDADDGGHDYLEMEFGGRAGIVDLYGYVDV
FNLTNSSSGDKGAGKSKMFMKFAPRFSIDAMTGWDLSAGPIQEVYFSTLFNWGGGAISGVDADGNEYGGDVNMSFWGLGA
DVMVPWLGKTGMNLYATYDMNAKDWNGYQFSMNWFKPVMNFDNGSFVSFQGYVDYQFGADAVDDMFVPTTSSGGAAYFGL
HWHSENYALGYGLKAYQDVYLVKDNGGIVGLESTGFAHYFTATYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=173, Percent_Identity=32.9479768786127, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 31306; Mature: 31306

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVKTLALAATAVAAMSAPTFAADRTDLRSGDYSWMQFNAMYAVNELPRSDADDGGHDY
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCE
LEMEFGGRAGIVDLYGYVDVFNLTNSSSGDKGAGKSKMFMKFAPRFSIDAMTGWDLSAGP
EEEEECCCCCEEEEECEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC
IQEVYFSTLFNWGGGAISGVDADGNEYGGDVNMSFWGLGADVMVPWLGKTGMNLYATYDM
HHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCEEEEEEEC
NAKDWNGYQFSMNWFKPVMNFDNGSFVSFQGYVDYQFGADAVDDMFVPTTSSGGAAYFGL
CCCCCCCEEEEEHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCEEEECCCCCCEEEEEE
HWHSENYALGYGLKAYQDVYLVKDNGGIVGLESTGFAHYFTATYKF
EEECCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEECC
>Mature Secondary Structure
MKNVKTLALAATAVAAMSAPTFAADRTDLRSGDYSWMQFNAMYAVNELPRSDADDGGHDY
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCE
LEMEFGGRAGIVDLYGYVDVFNLTNSSSGDKGAGKSKMFMKFAPRFSIDAMTGWDLSAGP
EEEEECCCCCEEEEECEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC
IQEVYFSTLFNWGGGAISGVDADGNEYGGDVNMSFWGLGADVMVPWLGKTGMNLYATYDM
HHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCEEEEEEEC
NAKDWNGYQFSMNWFKPVMNFDNGSFVSFQGYVDYQFGADAVDDMFVPTTSSGGAAYFGL
CCCCCCCEEEEEHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCEEEECCCCCCEEEEEE
HWHSENYALGYGLKAYQDVYLVKDNGGIVGLESTGFAHYFTATYKF
EEECCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8586275 [H]