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The map label for this gene is deoD [H]

Identifier: 167625045

GI number: 167625045

Start: 3823670

End: 3824380

Strand: Reverse

Name: deoD [H]

Synonym: Shal_3133

Alternate gene names: 167625045

Gene position: 3824380-3823670 (Counterclockwise)

Preceding gene: 167625046

Following gene: 167625043

Centisome position: 73.17

GC content: 45.01

Gene sequence:

>711_bases
ATGGCTACACCACACATTAATGCAGTAGACGGCGCATTTGGCGATACAGTGCTATTTCCTGGCGATCCATTACGCGCTAA
GTACATTGCTGAAACGTTTCTAGAGAACGTTGAGCAAGTGACTGACGTACGTAACATGCTTGGTTTTACTGGTACTTACA
AAGGCGTTCGTATTTCAGTTATGGGTTCAGGCATGGGTATTCCTTCTTGCTCAATCTACGCAACTGAATTGATTAAAGAC
TATGGCGTTAAGAACCTAATCCGCGTTGGTACTTGTGGCGCAGTAAGCACTGACGTTAAAGTACGTGACGTGATCATCGG
TATGGGTGCATGTACTGACTCACAAGTTAACCGTTTACGTTTCAAGGGCCAAGACTTCGCAGCTATCTGTGATTACAGCC
TACTAGCCGCTGTTGTTAAAGCTGCTGACGCAAAGGGTACTAAGTACCGCGTTGGTAACGTTTTCTCTGCAGACCTATTC
TACACGCCAGATCCAGAAATGTTTGACGTGATGGAAAAGATGGACGTGCTAGGTGTCGAAATGGAAGCTGCTGGCCTATA
TGGCGTAGCGAAAGAGTTCGGTGCTAAAGCTTTGTGTGTTTGTACTGTATCTGATCATATCCGTACAGGTGAAAAGACCT
CTTCTGATGAGCGTCAAACTACCTTCAACGAAATGATCGAAATGACTCTAGAAGCTGCTATTACTCTGTAA

Upstream 100 bases:

>100_bases
GCGGTAACAAGATTTGAATTTGGCGGCTCAGTTTGGGCCGCTAGCAAACAAGACTAAAGTTGTTTACGACGGTCTAAAAA
TATAAATAGGGGTTATTCTG

Downstream 100 bases:

>100_bases
TAGTCGCTGCTTCGCAGTCGTTGACTGCGAGGTTGAAGAGTAATAAAACGGACGCTTATGCGTCCGTTTTTGTTTTTAGC
CTCAAACTTTTCAGCCTACA

Product: purine nucleoside phosphorylase

Products: NA

Alternate protein names: PNP 2 [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MATPHINAVDGAFGDTVLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGVRISVMGSGMGIPSCSIYATELIKD
YGVKNLIRVGTCGAVSTDVKVRDVIIGMGACTDSQVNRLRFKGQDFAAICDYSLLAAVVKAADAKGTKYRVGNVFSADLF
YTPDPEMFDVMEKMDVLGVEMEAAGLYGVAKEFGAKALCVCTVSDHIRTGEKTSSDERQTTFNEMIEMTLEAAITL

Sequences:

>Translated_236_residues
MATPHINAVDGAFGDTVLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGVRISVMGSGMGIPSCSIYATELIKD
YGVKNLIRVGTCGAVSTDVKVRDVIIGMGACTDSQVNRLRFKGQDFAAICDYSLLAAVVKAADAKGTKYRVGNVFSADLF
YTPDPEMFDVMEKMDVLGVEMEAAGLYGVAKEFGAKALCVCTVSDHIRTGEKTSSDERQTTFNEMIEMTLEAAITL
>Mature_235_residues
ATPHINAVDGAFGDTVLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGVRISVMGSGMGIPSCSIYATELIKDY
GVKNLIRVGTCGAVSTDVKVRDVIIGMGACTDSQVNRLRFKGQDFAAICDYSLLAAVVKAADAKGTKYRVGNVFSADLFY
TPDPEMFDVMEKMDVLGVEMEAAGLYGVAKEFGAKALCVCTVSDHIRTGEKTSSDERQTTFNEMIEMTLEAAITL

Specific function: Cleavage Of Guanosine Or Inosine To Respective Bases And Sugar-1-Phosphate Molecules. [C]

COG id: COG0813

COG function: function code F; Purine-nucleoside phosphorylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family [H]

Homologues:

Organism=Escherichia coli, GI1790844, Length=234, Percent_Identity=70.9401709401709, Blast_Score=347, Evalue=3e-97,
Organism=Escherichia coli, GI1790265, Length=234, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004402
- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845 [H]

Pfam domain/function: PF01048 PNP_UDP_1 [H]

EC number: =2.4.2.1 [H]

Molecular weight: Translated: 25482; Mature: 25350

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPHINAVDGAFGDTVLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGVRISV
CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
MGSGMGIPSCSIYATELIKDYGVKNLIRVGTCGAVSTDVKVRDVIIGMGACTDSQVNRLR
EECCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHE
FKGQDFAAICDYSLLAAVVKAADAKGTKYRVGNVFSADLFYTPDPEMFDVMEKMDVLGVE
ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECEEECCCCHHHHHHHHHHHHCCE
MEAAGLYGVAKEFGAKALCVCTVSDHIRTGEKTSSDERQTTFNEMIEMTLEAAITL
EHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATPHINAVDGAFGDTVLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGVRISV
CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
MGSGMGIPSCSIYATELIKDYGVKNLIRVGTCGAVSTDVKVRDVIIGMGACTDSQVNRLR
EECCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHE
FKGQDFAAICDYSLLAAVVKAADAKGTKYRVGNVFSADLFYTPDPEMFDVMEKMDVLGVE
ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECEEECCCCHHHHHHHHHHHHCCE
MEAAGLYGVAKEFGAKALCVCTVSDHIRTGEKTSSDERQTTFNEMIEMTLEAAITL
EHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]