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The map label for this gene is deoB

Identifier: 167625046

GI number: 167625046

Start: 3824481

End: 3825701

Strand: Reverse

Name: deoB

Synonym: Shal_3134

Alternate gene names: 167625046

Gene position: 3825701-3824481 (Counterclockwise)

Preceding gene: 167625047

Following gene: 167625045

Centisome position: 73.19

GC content: 47.75

Gene sequence:

>1221_bases
ATGAAACGTACTATAATCATGATGCTAGATTCGTTCGGCATCGGCGAGGCGCACGACGCGCATGCCTTTGGTGATGTGGG
TTCAAACACATTTGGCAACATTGCTAAAGCGTGTGCAGAAGGTAAGGCTAATGATGGTCGTGAAGGCCCCTTGAAGCTGC
CCAACCTAGCTCGCTTAGGTCTCGGTCATGCATCAAAAGAGAGCACGGGCGAGTTTCCAGCAGGCTTTGGTGATGATGTC
GAGATCATTGGCGCATATGGCCATGCTGACGAATTAAGCTCAGGTAAAGATACACCAAGTGGACACTGGGAAATGGCTGG
CGTACCTGTTCTTTATGAATGGGGTTACTTTGGCGATAAGCAGAACTCTTTTCCAAAAGAGCTCACGGATAAAATTCTTG
CCAGAGCGGGTTTAAGTGGTTTTCTAGGAAACTGCCACTCTTCAGGCACGATAATTCTAGAAGAGCTTGGTGAAGAGCAT
ATGCGCACCGGCAAGCCAATTTTCTATACTTCGGCTGACTCTGTTTTCCAGATTGCGTGTCACGAAGAGAGCTTTGGTCT
TGAGAAGCTTTATGAGCTTTGCATTATTGCTCGTGAGGAGCTTGCCGATTACAACATCGGGCGTGTTATTGCTCGTCCGT
TTGTTGGCACAGGTCCCAGTGACTTTGCTCGTACAGGTAATCGTCGTGACTACGCAGTTGAGCCGCCAGCACCAACCGTG
CTTGATAAGCTTAAAGCGGCCGGCGGTGAAGTGGTCAGTGTAGGTAAGATTGCAGATATTTATGCACATTGTGGTATCAC
TAAGAAAGTAAAGGCGACAGGCCTTGAAGAACTATTTGATGCGACATTAGAGCAAGTTAAGCAAGCGGGTGACAATACAA
TCGTATTCACTAACTTCGTTGATTTTGACTCTCATTTCGGTCATCGCCGCGATGTAGCGGGCTACGCACGTAGCCTAGAG
TACTTTGACTCTCGTTTACCTGAGATCTTAGCGTTACTCGATGAAGATGATTTCTTGCTGTTAACGGCAGACCACGGCTG
TGATCCAACTTGGCCGGGCAGTGATCATACTCGTGAACGTGTACCGGTTTTAGCCTATGGCGCAGGCCTTGAGCCTGGCT
CTTTAGGATTACGCAATAGCTTTGCCGATATGGGACAATCCATTGCAAGCTACCATAAGCTTGAACCAATGGAATATGGC
GAATCATTTGTTCGTTCATAA

Upstream 100 bases:

>100_bases
GCAGTAAAGAAAGCGATTCATATTGGCGATACCAAACCAGACAAAACTCCGGAAATTTATCGTTATATCCGCGAGTCTGA
TCTGTAACGGAGCACAGTTT

Downstream 100 bases:

>100_bases
GCGGTAACAAGATTTGAATTTGGCGGCTCAGTTTGGGCCGCTAGCAAACAAGACTAAAGTTGTTTACGACGGTCTAAAAA
TATAAATAGGGGTTATTCTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKRTIIMMLDSFGIGEAHDAHAFGDVGSNTFGNIAKACAEGKANDGREGPLKLPNLARLGLGHASKESTGEFPAGFGDDV
EIIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFGDKQNSFPKELTDKILARAGLSGFLGNCHSSGTIILEELGEEH
MRTGKPIFYTSADSVFQIACHEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPAPTV
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEELFDATLEQVKQAGDNTIVFTNFVDFDSHFGHRRDVAGYARSLE
YFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRERVPVLAYGAGLEPGSLGLRNSFADMGQSIASYHKLEPMEYG
ESFVRS

Sequences:

>Translated_406_residues
MKRTIIMMLDSFGIGEAHDAHAFGDVGSNTFGNIAKACAEGKANDGREGPLKLPNLARLGLGHASKESTGEFPAGFGDDV
EIIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFGDKQNSFPKELTDKILARAGLSGFLGNCHSSGTIILEELGEEH
MRTGKPIFYTSADSVFQIACHEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPAPTV
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEELFDATLEQVKQAGDNTIVFTNFVDFDSHFGHRRDVAGYARSLE
YFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRERVPVLAYGAGLEPGSLGLRNSFADMGQSIASYHKLEPMEYG
ESFVRS
>Mature_406_residues
MKRTIIMMLDSFGIGEAHDAHAFGDVGSNTFGNIAKACAEGKANDGREGPLKLPNLARLGLGHASKESTGEFPAGFGDDV
EIIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFGDKQNSFPKELTDKILARAGLSGFLGNCHSSGTIILEELGEEH
MRTGKPIFYTSADSVFQIACHEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPAPTV
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEELFDATLEQVKQAGDNTIVFTNFVDFDSHFGHRRDVAGYARSLE
YFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRERVPVLAYGAGLEPGSLGLRNSFADMGQSIASYHKLEPMEYG
ESFVRS

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=406, Percent_Identity=69.9507389162562, Blast_Score=593, Evalue=1e-171,
Organism=Escherichia coli, GI1789781, Length=419, Percent_Identity=27.2076372315036, Blast_Score=108, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_SHEHH (B0TQ89)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001675340.1
- ProteinModelPortal:   B0TQ89
- SMR:   B0TQ89
- GeneID:   5905687
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_3134
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BioCyc:   SHAL458817:SHAL_3134-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44039; Mature: 44039

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTIIMMLDSFGIGEAHDAHAFGDVGSNTFGNIAKACAEGKANDGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHASKESTGEFPAGFGDDVEIIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFGDK
CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCCC
QNSFPKELTDKILARAGLSGFLGNCHSSGTIILEELGEEHMRTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHHCHHHHHHCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPAPTV
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCHHH
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEELFDATLEQVKQAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE
DFDSHFGHRRDVAGYARSLEYFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRER
CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHC
VPVLAYGAGLEPGSLGLRNSFADMGQSIASYHKLEPMEYGESFVRS
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MKRTIIMMLDSFGIGEAHDAHAFGDVGSNTFGNIAKACAEGKANDGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHASKESTGEFPAGFGDDVEIIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFGDK
CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCCC
QNSFPKELTDKILARAGLSGFLGNCHSSGTIILEELGEEHMRTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHHCHHHHHHCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPAPTV
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCHHH
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEELFDATLEQVKQAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE
DFDSHFGHRRDVAGYARSLEYFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRER
CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHC
VPVLAYGAGLEPGSLGLRNSFADMGQSIASYHKLEPMEYGESFVRS
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA