| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625011
Identifier: 167625011
GI number: 167625011
Start: 3781038
End: 3781880
Strand: Reverse
Name: 167625011
Synonym: Shal_3099
Alternate gene names: NA
Gene position: 3781880-3781038 (Counterclockwise)
Preceding gene: 167625013
Following gene: 167625010
Centisome position: 72.35
GC content: 45.08
Gene sequence:
>843_bases ATGTCTACGGAACATCGAGTATTAGTTGGTTTATTAAAAAAATTAAAGTCAGATTCCTTGGTCTTGCCGACTTTGCCTGA AGTGGCCATGCGAGTACAAGAAGTGGTCGGCCAAGAAGATACTAGTTTAAAAGATGTCGCCAGTATTATTGGTCAAGACG CGGCAATTTCAGCTCGGGTTATTCGCATTGCAAATAGTGCCATGTATAGCCGTGGGATCCCTGCGGAAAACGTTAATGCA GCAATTAATCGTATTGGGCTCATGCAGATAAAATCGATTGTAACGTCGATTGCTATGGAGCAACTCTTTATCTCGACCAA CCAGATGGTCTGGCAAGTGATGGATGAAGTATGGAGCTCATCCATTGATGTAACTGCTGCCGCGTGTGCGATGCTGCAAA TTTACAATGCGAATCATCCTAGTAGCAAACTTAACTTCGACACTATGACATTAGCGGGTCTAGTACATAACATTGGCGCC TTGCCTGTACTGACTGAAGCAGAGGCGCAGCCAGAGCTGTTTGACAGCATCGAAATGTTGCGGGCTTTAGTGAAAAAGCT GCAGGGGCCATTAGGGCGAGCTGTACTTAAGAGTTGGGAGTTCTCACCTGATGTGATGCAGGTGGTTGAGCGTTGGTCGG ATCTTACCTATAACGCTGAACAAGTTAGTTATTTAGACTTTATTCGCGCAGCAGCATTCTATACGGGAGAGCTTAGAGCG GGTAATGATTTGGAGCAAAGGATGACAGCCTTTATCGAGCGTGGTTTACCAGTATCGGTTGATGAGTTAGCGGGTGATAT ATTCCAAGAAGCCTATCAATCTATCAAGGCGAGTTACGAATAA
Upstream 100 bases:
>100_bases TTAACTATTGCACCAGTAAGATGATTTTGATCGGAACTCTCAGGTTTGAGCTGATATACTCAATTCGCTGCAAATTAATA CGATTTAAAAGGGAGTTGGG
Downstream 100 bases:
>100_bases CCTTGATGTTTAAATAGTGATGCTATGAAAACTTAAACGATAGTGTGTGCTGGCATAGGGGCTAGCAGGCACTATAGTTT ATAACAAAAGAAATTGAGAT
Product: putative signal transduction protein
Products: NA
Alternate protein names: Metal Dependent Phosphohydrolase; Sensor Histidine Kinase; Cytoplasmic Protein; Metal-Dependent Phosphohydrolase; Histidine Kinase; Metal-Dependent Hydrolase HDOD; HDIG Domain-Containing Protein; Metal-Dependent Phosphoesterase; HDOD Domain Family; Hdod Domain Family Protein
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MSTEHRVLVGLLKKLKSDSLVLPTLPEVAMRVQEVVGQEDTSLKDVASIIGQDAAISARVIRIANSAMYSRGIPAENVNA AINRIGLMQIKSIVTSIAMEQLFISTNQMVWQVMDEVWSSSIDVTAAACAMLQIYNANHPSSKLNFDTMTLAGLVHNIGA LPVLTEAEAQPELFDSIEMLRALVKKLQGPLGRAVLKSWEFSPDVMQVVERWSDLTYNAEQVSYLDFIRAAAFYTGELRA GNDLEQRMTAFIERGLPVSVDELAGDIFQEAYQSIKASYE
Sequences:
>Translated_280_residues MSTEHRVLVGLLKKLKSDSLVLPTLPEVAMRVQEVVGQEDTSLKDVASIIGQDAAISARVIRIANSAMYSRGIPAENVNA AINRIGLMQIKSIVTSIAMEQLFISTNQMVWQVMDEVWSSSIDVTAAACAMLQIYNANHPSSKLNFDTMTLAGLVHNIGA LPVLTEAEAQPELFDSIEMLRALVKKLQGPLGRAVLKSWEFSPDVMQVVERWSDLTYNAEQVSYLDFIRAAAFYTGELRA GNDLEQRMTAFIERGLPVSVDELAGDIFQEAYQSIKASYE >Mature_279_residues STEHRVLVGLLKKLKSDSLVLPTLPEVAMRVQEVVGQEDTSLKDVASIIGQDAAISARVIRIANSAMYSRGIPAENVNAA INRIGLMQIKSIVTSIAMEQLFISTNQMVWQVMDEVWSSSIDVTAAACAMLQIYNANHPSSKLNFDTMTLAGLVHNIGAL PVLTEAEAQPELFDSIEMLRALVKKLQGPLGRAVLKSWEFSPDVMQVVERWSDLTYNAEQVSYLDFIRAAAFYTGELRAG NDLEQRMTAFIERGLPVSVDELAGDIFQEAYQSIKASYE
Specific function: Unknown
COG id: COG1639
COG function: function code T; Predicted signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30887; Mature: 30756
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEHRVLVGLLKKLKSDSLVLPTLPEVAMRVQEVVGQEDTSLKDVASIIGQDAAISARV CCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH IRIANSAMYSRGIPAENVNAAINRIGLMQIKSIVTSIAMEQLFISTNQMVWQVMDEVWSS HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SIDVTAAACAMLQIYNANHPSSKLNFDTMTLAGLVHNIGALPVLTEAEAQPELFDSIEML CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH RALVKKLQGPLGRAVLKSWEFSPDVMQVVERWSDLTYNAEQVSYLDFIRAAAFYTGELRA HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC GNDLEQRMTAFIERGLPVSVDELAGDIFQEAYQSIKASYE CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure STEHRVLVGLLKKLKSDSLVLPTLPEVAMRVQEVVGQEDTSLKDVASIIGQDAAISARV CCCHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH IRIANSAMYSRGIPAENVNAAINRIGLMQIKSIVTSIAMEQLFISTNQMVWQVMDEVWSS HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SIDVTAAACAMLQIYNANHPSSKLNFDTMTLAGLVHNIGALPVLTEAEAQPELFDSIEML CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH RALVKKLQGPLGRAVLKSWEFSPDVMQVVERWSDLTYNAEQVSYLDFIRAAAFYTGELRA HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC GNDLEQRMTAFIERGLPVSVDELAGDIFQEAYQSIKASYE CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA